View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1554_low_13 (Length: 222)
Name: NF1554_low_13
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1554_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1982179 - 1982400
Alignment:
| Q |
1 |
cttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggggttactcttagacactaagtttcttcttcatgtggctcaacttctttttcc |
100 |
Q |
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| T |
1982179 |
cttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggcgttactcttagacactaagtttcttcttcatgtggctcaacttctttttcc |
1982278 |
T |
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| Q |
101 |
tcaagactctcctctttcaaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttgtttaaat |
200 |
Q |
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| T |
1982279 |
tcaagactctcctctttcaaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttgtttaact |
1982378 |
T |
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| Q |
201 |
cagttaaatctcttaagatttt |
222 |
Q |
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| T |
1982379 |
cagttaaatctcttaagatttt |
1982400 |
T |
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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 25839962 - 25840147
Alignment:
| Q |
18 |
aagtggtgttgtcatgtggtttcttaaaaggggttactcttagacactaagtttcttcttcatgtggctcaacttctttttcctcaagactctcctcttt |
117 |
Q |
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| T |
25839962 |
aagtcgtgctgtcatgtgtttgtttaagaggtgttactattagacactgagttgcttcttcgtgtggttcaccttattttttctcggcactctcctcttt |
25840061 |
T |
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| Q |
118 |
caaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttgtttaaatcag |
203 |
Q |
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| T |
25840062 |
caaattttcttttaatttttcaaacttctcgaagatttttgcgcaggctattttgagatattgttgggaagctttgtctaactcag |
25840147 |
T |
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