View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1554_low_14 (Length: 211)
Name: NF1554_low_14
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1554_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 515566 - 515723
Alignment:
| Q |
33 |
gagacaatacaaggagtgaaaggacgaaagctttgtagaaaagagtgtgtgtgagtaatggaggaagaagaaggagaagcattttctaagtgaccttgtg |
132 |
Q |
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| T |
515566 |
gagacaatacaaagagtgaaaggacgaaaactttgtagaaaagagtgtgtgtgagtaatggaggaagaagaaggagaagcgttttctaggtgaccttgtg |
515665 |
T |
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| Q |
133 |
ggaaataataaacccttgaatgcaactttggaattttgacggcagcggcagcacatgt |
190 |
Q |
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| T |
515666 |
ggaaataataaacccttgaatgcaactttggaattttgacggcagcggtagcacatgt |
515723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 560701 - 560624
Alignment:
| Q |
102 |
gaaggagaagcattttctaagtgaccttgtgggaaataataaacccttgaatgcaactttggaattttgacggcagcg |
179 |
Q |
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| T |
560701 |
gaagaagaagcatgttctaagtggccttgtggaaaatagtaaactctggaatgcaactttggtatttggacggcagcg |
560624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 8823119 - 8823054
Alignment:
| Q |
109 |
aagcattttctaagtgaccttgtgggaaataataaacccttgaatgcaactttggaattttgacgg |
174 |
Q |
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| T |
8823119 |
aagcatgttctaagtgaccttgcgggaaatagtaaacctttgaatgaagtttaggaattttgacgg |
8823054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 20229322 - 20229263
Alignment:
| Q |
102 |
gaaggagaagcattttctaagtgaccttgtgggaaataataaacccttgaatgcaacttt |
161 |
Q |
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| T |
20229322 |
gaagaagaagcatattctaagtggccttgtggaaaatagtaaactcttgaatgcaacttt |
20229263 |
T |
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