View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1554_low_4 (Length: 221)
Name: NF1554_low_4
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1554_low_4 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 6411293 - 6411089
Alignment:
| Q |
18 |
agaatatatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411293 |
agaatatatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttacc |
6411194 |
T |
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| Q |
118 |
ctcgaaggggaagaactggcagaaaacgccttgagaaatgtgagactccaaacacttgtgtatg-ttacaattttttgttgtgatatatatttttactta |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
6411193 |
ctcgaaggggaagaactggcagaaaacgtcttgagaaatgtgagactccaaacacttgtgtatgtttacaatattttgttgtgatatatatttttactta |
6411094 |
T |
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| Q |
217 |
tttcg |
221 |
Q |
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||||| |
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| T |
6411093 |
tttcg |
6411089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 6392129 - 6391925
Alignment:
| Q |
18 |
agaatatatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttacc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
6392129 |
agaatatatgattatgatgtctacaatgatttgggtcaaccagaccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttacc |
6392030 |
T |
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| Q |
118 |
ctcgaaggggaagaactggcagaaaacgccttgagaaatgtgagactccaaacacttgtgtatg-ttacaattttttgttgtgatatatatttttactta |
216 |
Q |
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| T |
6392029 |
ctcgaaggggaagaactggcagaaaacacctcgagaaatgtgagactccaaacacttgtgtctgtttgcaattttttgttgtgatatatatttttactta |
6391930 |
T |
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| Q |
217 |
tttcg |
221 |
Q |
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||||| |
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| T |
6391929 |
tttcg |
6391925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 6425317 - 6425197
Alignment:
| Q |
24 |
tatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttaccctcgaa |
123 |
Q |
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|||||||| ||||||||||||||||||||| | || ||| | ||| |||| ||||||||||||||| ||||| | |||||||||||||||||| |
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| T |
6425317 |
tatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaa |
6425218 |
T |
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| Q |
124 |
ggggaagaactggcagaaaac |
144 |
Q |
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|||| ||||| |||||||||| |
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| T |
6425217 |
gggggagaacaggcagaaaac |
6425197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 6353634 - 6353510
Alignment:
| Q |
17 |
aagaatatatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttac |
116 |
Q |
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||||||||||||||| ||||||||||||||||||||| | || ||| | ||| ||| |||| | |||||||||||||| || || |||||| |
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| T |
6353634 |
aagaatatatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcaagcgatttcccttac |
6353535 |
T |
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| Q |
117 |
cctcgaaggggaagaactggcagaa |
141 |
Q |
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||||||||||||||||||||||||| |
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| T |
6353534 |
cctcgaaggggaagaactggcagaa |
6353510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 6364507 - 6364471
Alignment:
| Q |
17 |
aagaatatatgattatgatgtctacaatgatttgggt |
53 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6364507 |
aagaatatatgattatgatgtctacaatgatttgggt |
6364471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7460705 - 7460579
Alignment:
| Q |
18 |
agaatatatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttacc |
117 |
Q |
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||||||||||||||||||||||||||||| |||||| | || ||| | | || ||||| |||||| ||| ||| ||| | | ||||||||||| |
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| T |
7460705 |
agaatatatgattatgatgtctacaatgacttgggtgatcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttgccttacc |
7460606 |
T |
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| Q |
118 |
ctcgaaggggaagaactggcagaaaac |
144 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
7460605 |
ctcgaaggggaagaaccggcagaaaac |
7460579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 6371331 - 6371254
Alignment:
| Q |
24 |
tatgattatgatgtctacaatgatttgggtcaaccagacgaaagtccttgcttgtatcgtccagttcttgggggatca |
101 |
Q |
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||||| || ||||||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||||| |
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| T |
6371331 |
tatgactacgatgtctacaatgatttgggtgaaccagacaaagaggctggcttgggtcgtccagttcttgggggatca |
6371254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6290542 - 6290510
Alignment:
| Q |
17 |
aagaatatatgattatgatgtctacaatgattt |
49 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
6290542 |
aagaatatatgattacgatgtctacaatgattt |
6290510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 6322588 - 6322524
Alignment:
| Q |
80 |
tcgtccagttcttgggggatcagccgccttgccttaccctcgaaggggaagaactggcagaaaac |
144 |
Q |
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|||||| ||| |||| ||||| | | |||||||||||||||||||||| ||||| ||||| |||| |
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| T |
6322588 |
tcgtcccgttattggaggatccgacaccttgccttaccctcgaaggggcagaaccggcaggaaac |
6322524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 42694426 - 42694394
Alignment:
| Q |
17 |
aagaatatatgattatgatgtctacaatgattt |
49 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
42694426 |
aagaatctatgattatgatgtctacaatgattt |
42694394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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