View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15550_high_10 (Length: 271)

Name: NF15550_high_10
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15550_high_10
NF15550_high_10
[»] chr5 (8 HSPs)
chr5 (46-167)||(21724126-21724247)
chr5 (46-167)||(21803863-21803984)
chr5 (46-167)||(19589488-19589609)
chr5 (203-260)||(21724267-21724324)
chr5 (203-260)||(21804003-21804060)
chr5 (17-47)||(40946710-40946740)
chr5 (19-48)||(4077837-4077866)
chr5 (19-47)||(30463750-30463778)
[»] chr8 (3 HSPs)
chr8 (46-167)||(14330655-14330776)
chr8 (203-260)||(14330795-14330852)
chr8 (19-48)||(38681136-38681165)
[»] chr7 (11 HSPs)
chr7 (46-167)||(9987269-9987390)
chr7 (203-260)||(9987410-9987467)
chr7 (46-108)||(17218614-17218676)
chr7 (47-108)||(13937439-13937500)
chr7 (203-257)||(17218440-17218495)
chr7 (208-259)||(39286621-39286672)
chr7 (47-108)||(39286470-39286531)
chr7 (208-259)||(13937590-13937641)
chr7 (19-49)||(13761779-13761809)
chr7 (17-47)||(24759474-24759504)
chr7 (121-157)||(17218532-17218568)
[»] chr2 (2 HSPs)
chr2 (47-108)||(31140170-31140231)
chr2 (19-48)||(26449092-26449121)
[»] scaffold0094 (3 HSPs)
scaffold0094 (203-259)||(6794-6850)
scaffold0094 (46-81)||(6634-6669)
scaffold0094 (121-157)||(6729-6765)
[»] chr3 (6 HSPs)
chr3 (208-259)||(15259820-15259871)
chr3 (47-108)||(15259961-15260022)
chr3 (203-259)||(33590829-33590885)
chr3 (17-47)||(29129130-29129160)
chr3 (21-50)||(19009698-19009727)
chr3 (19-47)||(52126885-52126913)
[»] chr1 (3 HSPs)
chr1 (17-47)||(29836239-29836269)
chr1 (19-49)||(39076266-39076296)
chr1 (19-47)||(40981638-40981666)
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-47)||(230464-230492)
[»] chr4 (14 HSPs)
chr4 (19-47)||(1678493-1678521)
chr4 (19-47)||(14210463-14210491)
chr4 (19-47)||(14211432-14211460)
chr4 (19-47)||(14212383-14212411)
chr4 (19-47)||(14213352-14213380)
chr4 (19-47)||(14214320-14214348)
chr4 (19-47)||(14215289-14215317)
chr4 (19-47)||(14218160-14218188)
chr4 (19-47)||(14219130-14219158)
chr4 (19-47)||(14220099-14220127)
chr4 (19-47)||(14221050-14221078)
chr4 (19-47)||(14222019-14222047)
chr4 (19-47)||(14222988-14223016)
chr4 (19-47)||(14586882-14586910)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 21724126 - 21724247
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  21724126 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttctcaagctcttcaaggttagcttctc 21724225  T
Q  146 ttctcttcagatttgaggttct 167  Q
    ||||||||||||||||||||||    
T  21724226 ttctcttcagatttgaggttct 21724247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 21803863 - 21803984
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  21803863 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttctcaagctcttcaaggttagcttctc 21803962  T
Q  146 ttctcttcagatttgaggttct 167  Q
    ||||||||||||||||||||||    
T  21803963 ttctcttcagatttgaggttct 21803984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 19589609 - 19589488
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctc 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  19589609 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaatttcttccaaaaatttgtaccatttctcaagctcttcaaggttagcttctc 19589510  T
Q  146 ttctcttcagatttgaggttct 167  Q
    ||||||||||||||||||||||    
T  19589509 ttctcttcagatttgaggttct 19589488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 21724267 - 21724324
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttctt 260  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  21724267 atttctcaagcttttcaaggtattaccattcactctctatattataatatgtgttctt 21724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 21804003 - 21804060
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttctt 260  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  21804003 atttctcaagcttttcaaggtattaccattcactctctatattataatatgtgttctt 21804060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 40946740 - 40946710
Alignment:
Q  17 aacatgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||||    
T  40946740 aacatgtttgctaggattagatataaaggat 40946710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 4077866 - 4077837
Alignment:
Q  19 catgtttgctaggattagatataaaggata 48  Q
    ||||||||||||||||||||||||||||||    
T  4077866 catgtttgctaggattagatataaaggata 4077837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 30463778 - 30463750
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  30463778 catgtttgctaggattagatataaaggat 30463750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 14330655 - 14330776
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  14330655 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttctcaagctcttcaaggttagcttctc 14330754  T
Q  146 ttctcttcagatttgaggttct 167  Q
     |||||||||||||||||||||    
T  14330755 ctctcttcagatttgaggttct 14330776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 14330795 - 14330852
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttctt 260  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  14330795 atttctcaagcttttcaaggtattaccattcactctctatattataatatgtgttctt 14330852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 38681165 - 38681136
Alignment:
Q  19 catgtttgctaggattagatataaaggata 48  Q
    ||||||||||||||||||||||||||||||    
T  38681165 catgtttgctaggattagatataaaggata 38681136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 9987269 - 9987390
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaacttgtaccatttgtcaagctcttctaggttagcttctc 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||    
T  9987269 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaagaacttgtaccacttctcaagctcttcaaggttagcttctc 9987368  T
Q  146 ttctcttcagatttgaggttct 167  Q
    ||||||||||||||||||||||    
T  9987369 ttctcttcagatttgaggttct 9987390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 9987410 - 9987467
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttctt 260  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  9987410 atttctcaagcttttcaaggtattaccattcactctctctattataatatatgttctt 9987467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 17218676 - 17218614
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaac 108  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||    
T  17218676 ataaccctaaaatcaatttcaccatcaacttctcaacctcttcaatcaatttcttccaaaaac 17218614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 13937439 - 13937500
Alignment:
Q  47 taaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaac 108  Q
    ||||||||||||||||||||||||||||||   || |||||||||||||| |||||||||||    
T  13937439 taaccctaaaatcaatttcacaatcaatttaggaagctcttcaatcaatttcttccaaaaac 13937500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 17218495 - 17218440
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctatt-ataatatgtgtt 257  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  17218495 atttctcaagctttttaaggtattaccattcactctctctattaataatatgtgtt 17218440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 39286621 - 39286672
Alignment:
Q  208 tcaagcttttcaaggtattaccattcactctttctattataatatgtgttct 259  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  39286621 tcaagcttttcaaggtattactattcactctctctattataatgtgtgttct 39286672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 39286470 - 39286531
Alignment:
Q  47 taaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaac 108  Q
    |||||||||||||||||||| |||||||||   || |||||||||||||| |||||||||||    
T  39286470 taaccctaaaatcaatttcataatcaatttaggaagctcttcaatcaatttcttccaaaaac 39286531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 13937590 - 13937641
Alignment:
Q  208 tcaagcttttcaaggtattaccattcactctttctattataatatgtgttct 259  Q
    ||||||||||||||||||||| || |||||| ||||||||||| ||||||||    
T  13937590 tcaagcttttcaaggtattactatccactctctctattataatgtgtgttct 13937641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 13761809 - 13761779
Alignment:
Q  19 catgtttgctaggattagatataaaggataa 49  Q
    |||||||||||||||||||||||||||||||    
T  13761809 catgtttgctaggattagatataaaggataa 13761779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 24759504 - 24759474
Alignment:
Q  17 aacatgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||||    
T  24759504 aacatgtttgctaggattagatataaaggat 24759474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 17218568 - 17218532
Alignment:
Q  121 tcaagctcttctaggttagcttctcttctcttcagat 157  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  17218568 tcaagctcttcaaggtttgcttctcttctcttcagat 17218532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 31140170 - 31140231
Alignment:
Q  47 taaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaac 108  Q
    ||||||||||||||||||||||||||||||   || |||||||||||||| |||||||||||    
T  31140170 taaccctaaaatcaatttcacaatcaatttaggaagctcttcaatcaatttcttccaaaaac 31140231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 26449121 - 26449092
Alignment:
Q  19 catgtttgctaggattagatataaaggata 48  Q
    ||||||||||||||||||||||||||||||    
T  26449121 catgtttgctaggattagatataaaggata 26449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 6794 - 6850
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttct 259  Q
    |||||||||||| || |||||||||||||||||||| | ||||||||||||||||||    
T  6794 atttctcaagctatttaaggtattaccattcactctctatattataatatgtgttct 6850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 6634 - 6669
Alignment:
Q  46 ataaccctaaaatcaatttcacaatcaatttctcaa 81  Q
    |||||||||||||||||||||||||||| |||||||    
T  6634 ataaccctaaaatcaatttcacaatcaacttctcaa 6669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 6729 - 6765
Alignment:
Q  121 tcaagctcttctaggttagcttctcttctcttcagat 157  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  6729 tcaagctcttcaaggtttgcttctcttctcttcagat 6765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 15259871 - 15259820
Alignment:
Q  208 tcaagcttttcaaggtattaccattcactctttctattataatatgtgttct 259  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  15259871 tcaagcttttcaaggtattactattcactctctctattataatgtgtgttct 15259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 15260022 - 15259961
Alignment:
Q  47 taaccctaaaatcaatttcacaatcaatttctcaaactcttcaatcaattccttccaaaaac 108  Q
    |||||||||||||||||||| |||||||||   || |||||||||||||| |||||||||||    
T  15260022 taaccctaaaatcaatttcaaaatcaatttaggaagctcttcaatcaatttcttccaaaaac 15259961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 33590829 - 33590885
Alignment:
Q  203 atttctcaagcttttcaaggtattaccattcactctttctattataatatgtgttct 259  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||| ||||||| ||||    
T  33590829 atttctcaagctttttaaggtatcaccattcactctctctattacaatatgtattct 33590885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 29129160 - 29129130
Alignment:
Q  17 aacatgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||||    
T  29129160 aacatgtttgctaggattagatataaaggat 29129130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 19009698 - 19009727
Alignment:
Q  21 tgtttgctaggattagatataaaggataac 50  Q
    ||||||||||||||||||||||||||||||    
T  19009698 tgtttgctaggattagatataaaggataac 19009727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 52126913 - 52126885
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  52126913 catgtttgctaggattagatataaaggat 52126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 29836269 - 29836239
Alignment:
Q  17 aacatgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||||    
T  29836269 aacatgtttgctaggattagatataaaggat 29836239  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 39076266 - 39076296
Alignment:
Q  19 catgtttgctaggattagatataaaggataa 49  Q
    |||||||||||||||||||||||||||||||    
T  39076266 catgtttgctaggattagatataaaggataa 39076296  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 40981638 - 40981666
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  40981638 catgtttgctaggattagatataaaggat 40981666  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 230492 - 230464
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  230492 catgtttgctaggattagatataaaggat 230464  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 1678493 - 1678521
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  1678493 catgtttgctaggattagatataaaggat 1678521  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14210463 - 14210491
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14210463 catgtttgctaggattagatataaaggat 14210491  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14211432 - 14211460
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14211432 catgtttgctaggattagatataaaggat 14211460  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14212383 - 14212411
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14212383 catgtttgctaggattagatataaaggat 14212411  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14213352 - 14213380
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14213352 catgtttgctaggattagatataaaggat 14213380  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14214320 - 14214348
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14214320 catgtttgctaggattagatataaaggat 14214348  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14215289 - 14215317
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14215289 catgtttgctaggattagatataaaggat 14215317  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14218160 - 14218188
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14218160 catgtttgctaggattagatataaaggat 14218188  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14219130 - 14219158
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14219130 catgtttgctaggattagatataaaggat 14219158  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14220099 - 14220127
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14220099 catgtttgctaggattagatataaaggat 14220127  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14221050 - 14221078
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14221050 catgtttgctaggattagatataaaggat 14221078  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14222019 - 14222047
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14222019 catgtttgctaggattagatataaaggat 14222047  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14222988 - 14223016
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14222988 catgtttgctaggattagatataaaggat 14223016  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14586882 - 14586910
Alignment:
Q  19 catgtttgctaggattagatataaaggat 47  Q
    |||||||||||||||||||||||||||||    
T  14586882 catgtttgctaggattagatataaaggat 14586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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