View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15550_high_12 (Length: 242)
Name: NF15550_high_12
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42650978 - 42651211
Alignment:
| Q |
1 |
attctaacagcaactgatctactatcgcagatttaccatctctgtcattggtaaattgattcagcatctctacttttaattcaagaattagttatttagt |
100 |
Q |
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| T |
42650978 |
attctaacagcaactgatctactatcgcggatttaccatctctgtcattggtaaattgattcagcatc-ctacttttaattcaagaatcagttatttagt |
42651076 |
T |
|
| Q |
101 |
acaggcatatacagtaaataatagaatcttcctttgactcatttcttaggctttgccctcttggaacttggagctttcttctttgctgtctttggctgtg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42651077 |
acaggcatatacagtaaataatagaatctttctttgactcatttcttaggctttgccctcttggaacttggagctttcttctttgctgtctttggctgtg |
42651176 |
T |
|
| Q |
201 |
attttcctccagtatttttacctcttttcttttca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42651177 |
attttcctccagtatttttacctcttttcttttca |
42651211 |
T |
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