View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15550_high_5 (Length: 382)
Name: NF15550_high_5
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 40107414 - 40107049
Alignment:
| Q |
1 |
tttttgtagaggacatataacattacagtgcacatgttcatcggggattcagtagatggtcttatttatggaaatgtgccaaaaaccggtgcaattaaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40107414 |
ttttagtagaggacatataacattacagtgcacatgttcatcggggattcagtagatggtcttatttatggaaatgtgccaaaaaccggtgcaattaaat |
40107315 |
T |
|
| Q |
101 |
ggacaattgtaaagatccatttctatttgacgatgtatatccaaacaggaggacaacaaattagcattattgttagtacaatttcacagtagcaagtact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40107314 |
ggacaattgtaaagatccatttctatttgacgatgtatatccaaacaggaggacaacaaattagcattattgttagtacaatttcacagtagcaagtact |
40107215 |
T |
|
| Q |
201 |
cccctggactaaaaaggacaacagactacttaagtcattattcccacataatgtccaacttgttgccacaaaaggatgcagtttatatgacttcaaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40107214 |
cccctggactaaaaaggacaacagactacttaagtcattattcccacataatgtccaacttgttgccacaaaaggatgcagtttatatgacttcaaatct |
40107115 |
T |
|
| Q |
301 |
tatatgtctattgttgtaattaaactcttgatttcaccagactagcgaaagtttacgaaaccatgt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40107114 |
tatatgtctattgttgtaattaaactcttgatttcaccagactagcgaaagttttcgaaaccatgt |
40107049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 12199102 - 12199169
Alignment:
| Q |
72 |
aaatgtgccaaaaaccggtgcaattaaatggacaattgtaaagatccatttctatttgacgatgtata |
139 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
12199102 |
aaatgtgccaaaaactggtgcaattaaatggacaattgtaaacatccatttctatttgatgatgtata |
12199169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 12199034 - 12199083
Alignment:
| Q |
20 |
acattacagtgcacatgttcatcggggattcagtagatggtcttatttat |
69 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
12199034 |
acattacagtgcccatgtccattggggattcagtagatagtcttatttat |
12199083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University