View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15550_high_8 (Length: 284)

Name: NF15550_high_8
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15550_high_8
NF15550_high_8
[»] chr4 (1 HSPs)
chr4 (1-279)||(18925115-18925393)
[»] chr7 (13 HSPs)
chr7 (1-279)||(4667385-4667663)
chr7 (30-279)||(4631371-4631626)
chr7 (166-279)||(4711607-4711723)
chr7 (1-51)||(4783205-4783255)
chr7 (1-51)||(4815634-4815684)
chr7 (171-279)||(4696730-4696841)
chr7 (166-279)||(4637301-4637417)
chr7 (1-47)||(4637533-4637579)
chr7 (1-47)||(4663369-4663415)
chr7 (1-47)||(4864604-4864650)
chr7 (1-47)||(4644374-4644420)
chr7 (1-47)||(4696548-4696594)
chr7 (179-279)||(4673147-4673250)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 18925115 - 18925393
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||  |||||||| ||||||||||||||||||    
T  18925115 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaa 18925214  T
Q  101 agactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttc 200  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18925215 tgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttc 18925314  T
Q  201 attccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctct 279  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925315 attccaaacaccataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctct 18925393  T

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Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4667663 - 4667385
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaa 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||  ||| |||| |||  | |||||||||||    
T  4667663 tttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacccttctcaa 4667564  T
Q  101 agactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttc 200  Q
    |||||||| |||  |||||||| ||| ||||||||||||||||||||| ||||| || ||| || | |  |||| | | |||||  || |  ||||||||    
T  4667563 agactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttc 4667464  T
Q  201 attccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctct 279  Q
    ||||| || | || ||| |||| ||| |||| |||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  4667463 attcccaaaaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgccgtcttttctct 4667385  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 4631626 - 4631371
Alignment:
Q  30 tcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaagactttaaccccgcactttggtttcaaa 129  Q
    ||||||||| || |||||||||  |||||||||||||| |||  ||| |||| |||  | |||||||||||||||||||| ||| | |||||| ||  ||    
T  4631626 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 4631527  T
Q  130 acgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttcattcc---aaacac---cataaatcaatc 223  Q
    |||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| ||||     
T  4631526 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 4631427  T
Q  224 aaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctct 279  Q
    ||| | ||  ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  4631426 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttcttttctct 4631371  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 4711607 - 4711723
Alignment:
Q  166 aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 262  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| ||||||||| |||||  |   |||||||||||| |||||||| || || |||||    
T  4711607 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 4711706  T
Q  263 catgccttcttttctct 279  Q
     ||||||||||||||||    
T  4711707 tatgccttcttttctct 4711723  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4783205 - 4783255
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct 51  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  4783205 tttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct 4783255  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4815634 - 4815684
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct 51  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  4815634 tttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct 4815684  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 4696730 - 4696841
Alignment:
Q  171 aaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtccatgc 267  Q
    ||||||| |||||||||||| |||||||||||||| | || |||||| || |||||  |   |||||||||||| |||||||| ||  | ||||| ||||    
T  4696730 aaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgc 4696829  T
Q  268 cttcttttctct 279  Q
    ||||||||||||    
T  4696830 cttcttttctct 4696841  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 279
Target Start/End: Complemental strand, 4637417 - 4637301
Alignment:
Q  166 aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 262  Q
    |||| ||||||| ||| |||||||| |||||||||||||| |||| |||||| ||||||||  |   ||||||||| || ||||| || ||  | |||||    
T  4637417 aaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtc 4637318  T
Q  263 catgccttcttttctct 279  Q
     ||||||||||||||||    
T  4637317 aatgccttcttttctct 4637301  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4637579 - 4637533
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 47  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||    
T  4637579 tttttcttcgtcttcatttttaccctacatcttatcaaaactttgaa 4637533  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4663415 - 4663369
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 47  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  4663415 tttttcttcgccttcatttttactcaacatcttataaaaactttgaa 4663369  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4864650 - 4864604
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 47  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  4864650 tttttgttcgtcttcatttttacccaacatcttatcaaaactttgaa 4864604  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4644420 - 4644374
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 47  Q
    |||||||||||||| ||||||||||  ||||||||||||| ||||||    
T  4644420 tttttcttcgcctttatttttaccctgcatcgtatcaaaattttgaa 4644374  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4696548 - 4696594
Alignment:
Q  1 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 47  Q
    ||||||||||||||||||||||||| || ||||| | ||||||||||    
T  4696548 tttttcttcgccttcatttttacccgacttcgtaccgaaactttgaa 4696594  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 4673250 - 4673147
Alignment:
Q  179 tgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggct---tatgctttcatcaacggaattgagatcgtgtccatgccttctttt 275  Q
    ||||||| |||| |||| ||||||||||| || ||| ||  ||||||| | |   ||||||||||| |||||||| || || ||||| ||||||||||||    
T  4673250 tgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgtcaatgccttctttt 4673151  T
Q  276 ctct 279  Q
    ||||    
T  4673150 ctct 4673147  T

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