View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15550_low_1 (Length: 675)
Name: NF15550_low_1
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 349 - 659
Target Start/End: Complemental strand, 37581944 - 37581634
Alignment:
| Q |
349 |
ggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggtgattatgttcttagctt |
448 |
Q |
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| T |
37581944 |
ggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggcgattatgttcttagctt |
37581845 |
T |
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| Q |
449 |
cattgtggacatcctagggttaaagtgtcaaattagaccaacgtgactaaaagttgatgcggggaagtttaaacttatcattcacgtatatttactgtat |
548 |
Q |
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| T |
37581844 |
cattgtggacatcctagggttaaagtgtcaaattagaccaacatgactaaaagttgatgcggggaagtttaaacttatcattcacgtatatttactgtat |
37581745 |
T |
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| Q |
549 |
cagtctcatttgggatggggccgatcattttgcaaaatgccgataaaggaactgtcgagaaaaaggtaaattggcttccattatgaatatttacatcagt |
648 |
Q |
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| T |
37581744 |
cagtctcatttgggatggggccgatcattttgcaaaatgccgataaaggagctgtcgagaaaaaggtaaattggcttccattatgaatatttacatcagt |
37581645 |
T |
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| Q |
649 |
tgggttctaga |
659 |
Q |
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||||||||||| |
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| T |
37581644 |
tgggttctaga |
37581634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 37582279 - 37582006
Alignment:
| Q |
14 |
cacagagcgcacagctgcagaatttggtgcaacaaaaataggtagatgggtaggcaaagcagcagatctaattcactttcctcgggtgggcagaaaaaag |
113 |
Q |
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| T |
37582279 |
cacagagcgcacagctgcagaatttggtgcaacaaaaataggtagatgggtaggcaaagcagcagatctaattcactttcctcgggtgggcagaaaaaag |
37582180 |
T |
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| Q |
114 |
atatcacggatcggcagaatatgaatctgtagaataaacaatgcaatacaacaagtccagtcagtaacttcaattttagtagtgcccaaagaagtctagg |
213 |
Q |
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| T |
37582179 |
atatcacggatcggcagaatatgaatctgtagaataaacaatgcaatacaacaagtccagtcagtaacttcaattttagtagtgcccaaagaagtctagg |
37582080 |
T |
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| Q |
214 |
tggcaatcaacccaccgcaataccaaacatgcatcaatcaaaataaagaatgcattggctaattcatatgagag |
287 |
Q |
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| T |
37582079 |
tggcaatcaacccaccgcaataccaaacatgcatcaatcaaaataaagaatgcattggctaattcatatgagag |
37582006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 352 - 656
Target Start/End: Complemental strand, 37575193 - 37574891
Alignment:
| Q |
352 |
tcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggtgattatgttcttagcttcat |
451 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
37575193 |
tcagttataacttgtgcccatactaaatccatgatagttgatgagcaaagaattacttcccactcggagaaagcattggtgattatgttctcagcatcat |
37575094 |
T |
|
| Q |
452 |
tgtggacatcctagggttaaagtgtcaaattagaccaacgtgactaaaagttgatgcggggaagtttaaacttatcattcacgtatatttactgtatcag |
551 |
Q |
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||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| | |||| |||||| || | | || | | |||||||||||| |
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| T |
37575093 |
tgtagacatcctagggttaaaatgtcaaattagaccaacaagagtaaaaattgatatgaggaaatttaaa--aattgtccgcgaacacttactgtatcag |
37574996 |
T |
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| Q |
552 |
tctcatttgggatggggccgatcattttgcaaaatgccgataaaggaactgtcgagaaaaaggtaaattggcttccattatgaatatttacatcagttgg |
651 |
Q |
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|||||| |||||| | || ||||||| ||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
37574995 |
cctcattagggatgagaccaatcatttcgcaaaatgctgataaaggagctgtcaagaaaaaagtaaattggcttccattatgtatatttacatcagctgg |
37574896 |
T |
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| Q |
652 |
gttct |
656 |
Q |
| |
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|||| |
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| T |
37574895 |
tttct |
37574891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 37575517 - 37575378
Alignment:
| Q |
18 |
gagcgcacagctgcagaatttggtgcaacaaaaataggtagatggg-taggcaaagcagcagatctaattcactttcctcgggtgggcagaaaaaagata |
116 |
Q |
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|||||||||||| |||| |||||||||||| || |||| ||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
37575517 |
gagcgcacagcttcagattttggtgcaacagaagtaggcagatggggtaggcaaagcggcagatgtaattcactttcctcaggtgggcagaaaaaagata |
37575418 |
T |
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| Q |
117 |
tcacggatcggcagaatatgaatctgtagaataaacaatgc |
157 |
Q |
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| T |
37575417 |
tcacggatcggcagaatatgaatctgtag-ataaacaatgc |
37575378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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