View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15550_low_10 (Length: 393)

Name: NF15550_low_10
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15550_low_10
NF15550_low_10
[»] chr5 (22 HSPs)
chr5 (212-375)||(31609236-31609403)
chr5 (157-229)||(31609423-31609495)
chr5 (101-152)||(19128777-19128828)
chr5 (109-152)||(29087932-29087975)
chr5 (104-146)||(235605-235647)
chr5 (106-152)||(4084887-4084933)
chr5 (106-152)||(6476789-6476835)
chr5 (106-151)||(10554555-10554600)
chr5 (107-152)||(29046036-29046081)
chr5 (104-152)||(28705875-28705923)
chr5 (101-140)||(17071243-17071282)
chr5 (101-140)||(22212972-22213011)
chr5 (101-140)||(34600280-34600319)
chr5 (104-146)||(236925-236967)
chr5 (111-165)||(2313941-2313995)
chr5 (106-152)||(27364485-27364531)
chr5 (106-152)||(28705172-28705218)
chr5 (103-152)||(234708-234757)
chr5 (103-152)||(237816-237865)
chr5 (111-152)||(7632102-7632143)
chr5 (103-152)||(19359711-19359760)
chr5 (111-151)||(1283503-1283543)
[»] chr3 (30 HSPs)
chr3 (15-139)||(31114962-31115084)
chr3 (17-142)||(29856595-29856718)
chr3 (63-140)||(31115555-31115632)
chr3 (100-151)||(29856061-29856112)
chr3 (101-152)||(45081397-45081448)
chr3 (111-165)||(17603163-17603217)
chr3 (103-152)||(265094-265143)
chr3 (103-140)||(41458053-41458090)
chr3 (104-141)||(44699880-44699917)
chr3 (103-152)||(48648211-48648260)
chr3 (103-152)||(51827490-51827539)
chr3 (104-152)||(981675-981723)
chr3 (112-152)||(10847914-10847954)
chr3 (104-152)||(52266450-52266498)
chr3 (104-152)||(52282409-52282457)
chr3 (103-146)||(13477774-13477817)
chr3 (104-151)||(17605715-17605762)
chr3 (113-152)||(40872814-40872853)
chr3 (101-140)||(46150723-46150762)
chr3 (51-142)||(48506455-48506544)
chr3 (106-152)||(29856036-29856082)
chr3 (106-152)||(31974659-31974705)
chr3 (104-146)||(48413333-48413375)
chr3 (106-144)||(52281782-52281820)
chr3 (111-152)||(21727533-21727574)
chr3 (112-152)||(13477065-13477105)
chr3 (104-152)||(41474658-41474706)
chr3 (104-152)||(48507029-48507077)
chr3 (104-140)||(48764497-48764533)
chr3 (112-152)||(54458670-54458710)
[»] chr4 (29 HSPs)
chr4 (103-165)||(599297-599359)
chr4 (101-152)||(47688473-47688524)
chr4 (104-152)||(9365813-9365861)
chr4 (101-140)||(5046004-5046043)
chr4 (104-151)||(16903640-16903687)
chr4 (103-146)||(20774176-20774219)
chr4 (104-146)||(30573706-30573748)
chr4 (104-152)||(8247704-8247752)
chr4 (104-152)||(8265369-8265417)
chr4 (103-139)||(30573161-30573197)
chr4 (106-146)||(47785798-47785838)
chr4 (104-152)||(53732443-53732491)
chr4 (101-152)||(55001434-55001485)
chr4 (106-152)||(142523-142569)
chr4 (106-152)||(9365177-9365223)
chr4 (106-152)||(11939440-11939486)
chr4 (106-152)||(26147031-26147077)
chr4 (109-151)||(43146650-43146692)
chr4 (101-139)||(43146692-43146730)
chr4 (101-138)||(53147893-53147930)
chr4 (111-152)||(55976174-55976215)
chr4 (104-152)||(8248517-8248565)
chr4 (104-152)||(8266182-8266230)
chr4 (106-146)||(11938725-11938765)
chr4 (106-146)||(19080399-19080439)
chr4 (112-152)||(52871306-52871346)
chr4 (104-140)||(53148608-53148644)
chr4 (106-146)||(53733730-53733770)
chr4 (104-152)||(56262486-56262534)
[»] chr1 (25 HSPs)
chr1 (103-152)||(30663972-30664021)
chr1 (101-152)||(168897-168948)
chr1 (104-151)||(46812184-46812231)
chr1 (104-146)||(25468523-25468565)
chr1 (103-152)||(34309226-34309275)
chr1 (108-152)||(4439207-4439251)
chr1 (104-152)||(28181540-28181588)
chr1 (104-146)||(8988545-8988587)
chr1 (103-152)||(25469082-25469131)
chr1 (103-152)||(30663365-30663414)
chr1 (108-152)||(4433848-4433892)
chr1 (104-152)||(13263513-13263561)
chr1 (105-152)||(10121550-10121597)
chr1 (113-152)||(45818028-45818067)
chr1 (109-152)||(49680818-49680861)
chr1 (106-152)||(169626-169672)
chr1 (106-140)||(8987809-8987843)
chr1 (106-152)||(13262840-13262886)
chr1 (104-146)||(28182069-28182111)
chr1 (106-152)||(30932794-30932840)
chr1 (103-152)||(27256708-27256757)
chr1 (103-152)||(34308480-34308529)
chr1 (101-165)||(27789889-27789953)
chr1 (104-140)||(32038496-32038532)
chr1 (104-152)||(36389782-36389830)
[»] scaffold0085 (5 HSPs)
scaffold0085 (104-152)||(15030-15078)
scaffold0085 (104-152)||(15089-15137)
scaffold0085 (103-152)||(22066-22115)
scaffold0085 (106-146)||(15857-15897)
scaffold0085 (104-140)||(21501-21537)
[»] chr7 (30 HSPs)
chr7 (101-152)||(24389610-24389661)
chr7 (103-152)||(30661451-30661500)
chr7 (103-152)||(37949612-37949661)
chr7 (104-152)||(26636110-26636158)
chr7 (106-152)||(7668489-7668535)
chr7 (103-165)||(19067631-19067693)
chr7 (106-152)||(25342504-25342550)
chr7 (106-152)||(25343310-25343356)
chr7 (106-152)||(46428194-46428240)
chr7 (104-149)||(3027984-3028029)
chr7 (104-165)||(3029195-3029256)
chr7 (103-152)||(25599029-25599078)
chr7 (104-152)||(3772523-3772571)
chr7 (104-140)||(26636857-26636893)
chr7 (101-140)||(21496977-21497016)
chr7 (109-152)||(30660600-30660643)
chr7 (109-152)||(37950469-37950512)
chr7 (106-152)||(27948453-27948499)
chr7 (103-141)||(31954289-31954327)
chr7 (111-165)||(43065120-43065174)
chr7 (111-152)||(13785597-13785638)
chr7 (111-140)||(14305109-14305138)
chr7 (103-152)||(19068391-19068440)
chr7 (103-152)||(40273567-40273616)
chr7 (106-146)||(18977768-18977808)
chr7 (106-138)||(23889867-23889899)
chr7 (106-138)||(23902062-23902094)
chr7 (103-139)||(24581063-24581099)
chr7 (104-152)||(25599816-25599864)
chr7 (104-152)||(45099890-45099938)
[»] chr2 (23 HSPs)
chr2 (105-152)||(23856643-23856690)
chr2 (106-152)||(24933844-24933890)
chr2 (103-146)||(11750271-11750314)
chr2 (101-152)||(36237639-36237690)
chr2 (106-152)||(1297121-1297167)
chr2 (106-152)||(9275594-9275640)
chr2 (106-152)||(29719454-29719500)
chr2 (103-140)||(8542543-8542580)
chr2 (104-140)||(22560564-22560600)
chr2 (104-152)||(42182611-42182659)
chr2 (106-165)||(15774197-15774256)
chr2 (101-140)||(18174663-18174702)
chr2 (106-152)||(1296387-1296433)
chr2 (106-152)||(9276328-9276374)
chr2 (106-151)||(8670711-8670756)
chr2 (104-141)||(22559877-22559914)
chr2 (112-149)||(40252033-40252070)
chr2 (106-154)||(8713488-8713536)
chr2 (106-146)||(11007245-11007285)
chr2 (101-165)||(22301863-22301927)
chr2 (112-152)||(23857028-23857068)
chr2 (112-152)||(26588228-26588268)
chr2 (108-152)||(29512379-29512423)
[»] chr6 (12 HSPs)
chr6 (104-152)||(10171283-10171331)
chr6 (104-152)||(26529509-26529557)
chr6 (103-146)||(8488482-8488525)
chr6 (104-152)||(10171962-10172010)
chr6 (104-152)||(26528830-26528878)
chr6 (101-140)||(3623194-3623233)
chr6 (109-152)||(19322990-19323033)
chr6 (106-152)||(11434455-11434501)
chr6 (106-152)||(19323765-19323811)
chr6 (101-146)||(19653983-19654028)
chr6 (111-152)||(33435347-33435388)
chr6 (111-151)||(19311830-19311870)
[»] chr8 (11 HSPs)
chr8 (106-152)||(38576300-38576346)
chr8 (104-152)||(11686960-11687008)
chr8 (113-152)||(8372921-8372960)
chr8 (109-152)||(41974648-41974691)
chr8 (104-146)||(31602030-31602072)
chr8 (104-146)||(37064830-37064872)
chr8 (114-152)||(37732834-37732872)
chr8 (112-152)||(3043250-3043290)
chr8 (104-140)||(8298267-8298303)
chr8 (104-152)||(26654374-26654422)
chr8 (101-153)||(38628257-38628309)
[»] scaffold0093 (1 HSPs)
scaffold0093 (103-138)||(23724-23759)
[»] scaffold0176 (1 HSPs)
scaffold0176 (106-152)||(26599-26645)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 212 - 375
Target Start/End: Complemental strand, 31609403 - 31609236
Alignment:
Q  212 aaaaattaaacacgtattatttcgtgagttatgggatcaatagtttcgc----gatatattacagtaagcttttagtgattgaagctcannnnnnngttg 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||     |||||||| ||||||||||||||||||||||||||       ||||    
T  31609403 aaaaattaaacacgcattatttcgtgagttatgggatcaatagtttcgcaatatatatattagagtaagcttttagtgattgaagctcatttttttgttg 31609304  T
Q  308 gaataattgaagctcattttatcatgaaaattaatgaattataaatgattgtattactaccaagtcag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31609303 gaataattgaagctcattttatcatgaaaattaatgaattataaatgattgaattactaccaagtcag 31609236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 31609495 - 31609423
Alignment:
Q  157 tatatatatttaagaacggaggaaataaataaattaaaagtttgaccaacattttaaaaattaaacacgtatt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31609495 tatatatatttaagaacggaggaaataaataaattaaaagtttccccaacattttaaaaattaaacacgtatt 31609423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 19128828 - 19128777
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||||| |||||    
T  19128828 taaacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 19128777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 29087975 - 29087932
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  29087975 tgagatttggtgtcaatgaatccgttgacacctggtgtcaacgg 29087932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 235647 - 235605
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  235647 acggttgagatttggtgtcaacgaatccgttgacacctggtgt 235605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 4084933 - 4084887
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||    
T  4084933 ggttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacgg 4084887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 6476789 - 6476835
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  6476789 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 6476835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 10554600 - 10554555
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  10554600 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacg 10554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 29046081 - 29046036
Alignment:
Q  107 gttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  29046081 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 29046036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 28705875 - 28705923
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||| |||||    
T  28705875 acggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacgg 28705923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 17071282 - 17071243
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  17071282 taaacggttgagatttggtgtcaacgaattcgttgacacc 17071243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 22212972 - 22213011
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  22212972 taaacggccgagatttggtgtcaatgaatccgttgacacc 22213011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 34600319 - 34600280
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  34600319 taaacggttgagatttggtgtcaacgaattcgttgacacc 34600280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 236925 - 236967
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  236925 acggttgagatttggtgtctacgaatccgttgacacctggtgt 236967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 2313995 - 2313941
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||||||||||||||||||| ||||||||| ||||| || || || |||||||||    
T  2313995 agatttggtgtcaatgaatctgttgacacctggtgtcaatggatcctatatatat 2313941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 27364485 - 27364531
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||||| |||||||| ||||| |||||    
T  27364485 ggttgagatttggtgtcaacgaatccattgacacctggtgtcaacgg 27364531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 28705218 - 28705172
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||| || ||||||||||||||| ||||| |||||    
T  28705218 ggttgagatttggtgtaaacgaatccgttgacacctggtgtcaacgg 28705172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 234757 - 234708
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| | |||||||||||| ||||||||||||||| ||||| |||||    
T  234757 aacggttaatatttggtgtcaacgaatccgttgacacctggtgtcaacgg 234708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 237816 - 237865
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| | |||||||||||| ||||||||||||||| ||||| |||||    
T  237816 aacggttaatatttggtgtcaacgaatccgttgacacctggtgtcaacgg 237865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 7632143 - 7632102
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||| ||||||||||||||| ||||| |||||    
T  7632143 agatttggtgtcaacgaatccgttgacacctggtgtcaacgg 7632102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 19359760 - 19359711
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| | |||||||||||| ||||||||||||||| ||||| |||||    
T  19359760 aacggttaatatttggtgtcaacgaatccgttgacacctggtgtcaacgg 19359711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 1283503 - 1283543
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    |||||||||||||| ||||||||||||||| ||||| ||||    
T  1283503 agatttggtgtcaacgaatccgttgacacctggtgtcaacg 1283543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 31115084 - 31114962
Alignment:
Q  15 gaagatggagcacgtggaaatcaagtgataatagcgcaggtgaataattttaacaaacaattgtggccctttggattnnnnnnnngtaaacggttgagat 114  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||    
T  31115084 gaagatggagcacttggaaatcaagtgaaaatagcccaggtgaataattttaacaaacaattgcggccctttggatt--aaaaaagtaaacggttgagat 31114987  T
Q  115 ttggtgtcaatgaatccgttgacac 139  Q
    ||||| |||| ||||||||||||||    
T  31114986 ttggtatcaacgaatccgttgacac 31114962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 29856595 - 29856718
Alignment:
Q  17 agatggagcacgtggaaatcaagtgataatagcgcaggtgaataattttaacaaacaattgtggccctttggattnnnnnnnngtaaacggttgagattt 116  Q
    |||| ||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||||        |||||||||||||||||    
T  29856595 agatagagcaggtggaaatcaagtgaaaatagcgcaaatgaataattttaacaaacaattgtagccctttggatt--aaaaaagtaaacggttgagattt 29856692  T
Q  117 ggtgtcaatgaatccgttgacaccag 142  Q
    |||||||| |||||||||||||||||    
T  29856693 ggtgtcaacgaatccgttgacaccag 29856718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 31115555 - 31115632
Alignment:
Q  63 tttaacaaacaattgtggccctttggattnnnnnnnngtaaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||| ||||||||||        ||||||| ||||||||||||||||| ||||| |||||||||    
T  31115555 tttaacaaacaattgtggtcctttggattaaaaaaaagtaaacgattgagatttggtgtcaacgaatctgttgacacc 31115632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 29856112 - 29856061
Alignment:
Q  100 gtaaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||| ||||    
T  29856112 gtaaacggctgagatttggtgtcaacgaatccgttgacaccagctgtcaacg 29856061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 45081397 - 45081448
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| ||||||||||||||||||| |||||||||||||| |||||| |||||    
T  45081397 taaatggttgagatttggtgtcaacgaatccgttgacactaggtgtcaacgg 45081448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 17603217 - 17603163
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| || |||||||||    
T  17603217 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatatatat 17603163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 265094 - 265143
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||| |||||    
T  265094 aacgcttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 265143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 41458090 - 41458053
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||| |||||||||||||||    
T  41458090 aacggttgagatttggtgtcaacgaatccgttgacacc 41458053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 44699917 - 44699880
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacca 141  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  44699917 acggttgagatttggtgtcaacgaatccgttgacacca 44699880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 48648260 - 48648211
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||| |||||    
T  48648260 aacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 48648211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 51827490 - 51827539
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||| |||||    
T  51827490 aacggttaagatttggtgacaacgaatccgttgacaccaggtgtcaacgg 51827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 981723 - 981675
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  981723 acggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 981675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 10847914 - 10847954
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  10847914 gatttggtgtcaatgaatctgttgacacctggtgttaacgg 10847954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 52266450 - 52266498
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| |||| ||||| |||||||||||    
T  52266450 acggttgagatttggtgtcaacgaattcgttaacacctggtgttaacgg 52266498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 52282409 - 52282457
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||  |||||||||||||||||||||||||||| ||||| |||||    
T  52282409 acggttgtaatttggtgtcaatgaatccgttgacacctggtgtcaacgg 52282457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 13477774 - 13477817
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||||||||||||||||||| |||| |||||||||| |||||    
T  13477774 aacggttgagatttggtgtcaacgaattcgttgacacctggtgt 13477817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 17605762 - 17605715
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    |||||||| |||||||||||| ||||||||||||||| ||||| ||||    
T  17605762 acggttgaaatttggtgtcaacgaatccgttgacacctggtgtcaacg 17605715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 40872814 - 40872853
Alignment:
Q  113 atttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  40872814 atttggtgtcaatgaatccgttgacacctggtgtcaacgg 40872853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 46150723 - 46150762
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  46150723 taaatggttgagatttggtgtcaacgaatccgttgacacc 46150762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 48506544 - 48506455
Alignment:
Q  51 caggtgaataattttaacaaacaattgtggccctttggattnnnnnnnngtaaacggttgagatttggtgtcaatgaatccgttgacaccag 142  Q
    ||||||| ||| |||||||||||||| ||| ||||||||||         || ||||||||||||||||||||| |||| ||||||||||||    
T  48506544 caggtgagtaaatttaacaaacaattatggacctttggattaaaaata--tagacggttgagatttggtgtcaacgaattcgttgacaccag 48506455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 29856036 - 29856082
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||| |||||||| | ||||| |||||    
T  29856036 ggttgagatttggtgtcaatgaatacgttgacagctggtgtcaacgg 29856082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 31974705 - 31974659
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||  ||||| |||||    
T  31974705 ggttgagatttggtgtcaacgaatccgttgacacttggtgtcaacgg 31974659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 48413375 - 48413333
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||    
T  48413375 acggttgtgatttggtgtcaacgaatccgttgacacctggtgt 48413333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 52281820 - 52281782
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggt 144  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  52281820 ggttgagatctggtgtcaacgaatccgttgacaccaggt 52281782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 21727533 - 21727574
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||| ||||||||||||||| ||||| |||||    
T  21727533 agatttggtgtcaacgaatccgttgacacctggtgtcaacgg 21727574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 13477105 - 13477065
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||| |||||||||| ||||| |||||    
T  13477105 gatttggtgtcaatgaattcgttgacacctggtgtcaacgg 13477065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 41474706 - 41474658
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||| |||| || ||||||||||||||||| ||| |||||    
T  41474706 acggttgagattttgtgtaaacgaatccgttgacaccagatgtcaacgg 41474658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 48507029 - 48507077
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| | |||||||| ||||| |||||    
T  48507029 acggttgagatttggtgtcaacgaattcattgacacctggtgtcaacgg 48507077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 48764533 - 48764497
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  48764533 acggttgagatttggtgtcaacgaattcgttgacacc 48764497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 54458670 - 54458710
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||  |||||||||||||||||||| |||||    
T  54458670 gatttggtgtcaaccaatccgttgacaccaggtgtcaacgg 54458710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 599297 - 599359
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| ||||| || |||||||||    
T  599297 aacgattgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctatatatat 599359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 47688473 - 47688524
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  47688473 taaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 47688524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 9365813 - 9365861
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  9365813 acggttgtgatttggtgtcaatgaatccgttgacacctggtgtcaacgg 9365861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 5046043 - 5046004
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5046043 taaacggttgagatttggtgtcaacgaatccgttgacacc 5046004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 16903640 - 16903687
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  16903640 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacg 16903687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 20774176 - 20774219
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  20774176 aacggttgagatttggtgtcaacgaatccgttgacacctggtgt 20774219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 30573706 - 30573748
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  30573706 acggttgagatttggtgtcaacgaatccgttgacacctggtgt 30573748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 8247752 - 8247704
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| |||||| ||||||| ||||||||||||||||||||| |||||    
T  8247752 acggttaagattttgtgtcaacgaatccgttgacaccaggtgtcaacgg 8247704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 8265417 - 8265369
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| |||||| ||||||| ||||||||||||||||||||| |||||    
T  8265417 acggttaagattttgtgtcaacgaatccgttgacaccaggtgtcaacgg 8265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 30573197 - 30573161
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacac 139  Q
    ||||||| |||||||||||||||||||||||||||||    
T  30573197 aacggttaagatttggtgtcaatgaatccgttgacac 30573161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 47785798 - 47785838
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  47785798 ggttgagatttggtgtcaacgaatccgttgacacctggtgt 47785838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 53732491 - 53732443
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||| |||||    
T  53732491 acggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacgg 53732443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 55001434 - 55001485
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||| |||||| ||||||| ||||||||||||||| ||||| |||||    
T  55001434 taaacggttaagatttagtgtcaacgaatccgttgacacctggtgtcaacgg 55001485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 142523 - 142569
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| ||||||||||||||||||| |||||||||| ||||| |||||    
T  142523 ggttaagatttggtgtcaatgaattcgttgacacccggtgtcaacgg 142569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 9365223 - 9365177
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||  ||| |||||||||| |||||||||||    
T  9365223 ggttgagatttggtgtcaacaaattcgttgacacctggtgttaacgg 9365177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 11939440 - 11939486
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |||||    
T  11939440 ggttgagatttcgtgtcaacgaatccgttgacactaggtgtcaacgg 11939486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 26147031 - 26147077
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  26147031 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 26147077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 43146650 - 43146692
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||    
T  43146650 tgagatttggtgtcaaggaatccgttgacacctggtgtcaacg 43146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 43146730 - 43146692
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacac 139  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  43146730 taaacggttaagatttggtgtcaacgaatccgttgacac 43146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 53147930 - 53147893
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgaca 138  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  53147930 taaacggttgggatttggtgtcaacgaatccgttgaca 53147893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 55976215 - 55976174
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||| ||||||||||||||| ||||| |||||    
T  55976215 agatttggtgtcaacgaatccgttgacacctggtgtcaacgg 55976174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 8248517 - 8248565
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| |||||||||||||| ||||||||||||| | ||||| |||||    
T  8248517 acggttaagatttggtgtcaacgaatccgttgacatctggtgtcaacgg 8248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 8266182 - 8266230
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| |||||||||||||| ||||||||||||| | ||||| |||||    
T  8266182 acggttaagatttggtgtcaacgaatccgttgacatctggtgtcaacgg 8266230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 11938765 - 11938725
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  11938765 ggttgagatttggtgtcaacgaattcgttgacacctggtgt 11938725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 19080439 - 19080399
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||| |||||||||||| ||||||||||||||| |||||    
T  19080439 ggttgaaatttggtgtcaacgaatccgttgacacctggtgt 19080399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 52871346 - 52871306
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||| ||||||||||||||| ||||| |||||    
T  52871346 gatttggtgtcaacgaatccgttgacacctggtgtcaacgg 52871306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 53148608 - 53148644
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  53148608 acggttgagatttggtgtcaacgaatctgttgacacc 53148644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 53733730 - 53733770
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||| |||||||||||| ||||||||||||||| |||||    
T  53733730 ggttgaaatttggtgtcaacgaatccgttgacacctggtgt 53733770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 56262534 - 56262486
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| | |||||||| ||||| |||||    
T  56262534 acggttgagatttggtgtcaacgaattcattgacacctggtgtcaacgg 56262486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 30663972 - 30664021
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  30663972 aacggttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacgg 30664021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 168948 - 168897
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  168948 taaacggttgagatttggtgtcaatgaatccgctgacacctggtgtcaacgg 168897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 46812184 - 46812231
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  46812184 acggttgagatttggtgtcaacgaatccgttgacacctggtgttaacg 46812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 25468565 - 25468523
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  25468565 acggttgagatttggtgtcaatgaatccgttgacacctggtgt 25468523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 34309226 - 34309275
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  34309226 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 34309275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 4439207 - 4439251
Alignment:
Q  108 ttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||    
T  4439207 ttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacgg 4439251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 28181588 - 28181540
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  28181588 acggttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacgg 28181540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 8988545 - 8988587
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  8988545 acggttgagatttggtgtcaaggaatccgttgacacctggtgt 8988587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 25469082 - 25469131
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||| |||||    
T  25469082 aacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 25469131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 30663414 - 30663365
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||| |||||    
T  30663414 aacggttgagatttggtgtcaacgaatccgttgatacctggtgtcaacgg 30663365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 4433848 - 4433892
Alignment:
Q  108 ttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||    
T  4433848 ttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 4433892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 13263513 - 13263561
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| |||||    
T  13263513 acggttgagatttggtgtcaacgaatccattgacacctggtgtcaacgg 13263561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 10121550 - 10121597
Alignment:
Q  105 cggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  10121550 cggttgagatttggtgtcaaccaatccgttgacacctggtgtcaacgg 10121597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 45818067 - 45818028
Alignment:
Q  113 atttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  45818067 atttggtgtcaatgaatccgttgacacctggtgtcaacgg 45818028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 49680861 - 49680818
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  49680861 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 49680818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 169626 - 169672
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||| ||| |||||||||| ||||| |||||    
T  169626 ggttgagatttggtgtcaataaattcgttgacacctggtgtcaacgg 169672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 8987843 - 8987809
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||| |||||||||||||||    
T  8987843 ggttgagatttggtgtcaacgaatccgttgacacc 8987809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 13262886 - 13262840
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  13262886 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 13262840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 28182069 - 28182111
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||| |||||||||||||| ||||||||||||||| |||||    
T  28182069 acggttaagatttggtgtcaaagaatccgttgacacctggtgt 28182111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 30932794 - 30932840
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||| ||| ||||||||||||||| ||||| |||||    
T  30932794 ggttgagatttggtgccaacgaatccgttgacacctggtgtcaacgg 30932840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 27256708 - 27256757
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||| |||||||||||| |||| |||||||||| ||||| |||||    
T  27256708 aacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacgg 27256757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 34308529 - 34308480
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||| |||||||||||| |||| |||||||||| ||||| |||||    
T  34308529 aacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacgg 34308480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 27789953 - 27789889
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    ||||||||||||||||| |||||| ||||| ||| ||||| ||||| ||| | || |||||||||    
T  27789953 taaacggttgagatttgatgtcaacgaatcggttaacacctggtgtcaacagatcatatatatat 27789889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 32038532 - 32038496
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  32038532 acggttgagatttggtgtcaacgaattcgttgacacc 32038496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 36389830 - 36389782
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||| ||||||||||||||   |||||||||||||||||||| |||||    
T  36389830 acggtcgagatttggtgtcagcaaatccgttgacaccaggtgtcaacgg 36389782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 15078 - 15030
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  15078 acggttgagatttggtgtcaatgaatccgttgacactaggtgtcaacgg 15030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 15137 - 15089
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  15137 acggttgagatttggtgtcaatgaatccgttgacactaggtgtcaacgg 15089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 22066 - 22115
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||| | |||||||||||| ||||||||||||||| ||||| |||||    
T  22066 aacggttaaaatttggtgtcaacgaatccgttgacacctggtgtcaacgg 22115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 15857 - 15897
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  15857 ggttgagatttggtgtcaacgaattcgttgacacctggtgt 15897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 21537 - 21501
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  21537 acggttgagatttggtgtcaacgaattcgttgacacc 21501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 24389610 - 24389661
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  24389610 taaatggttgagatttggtgtcaatgaatccgttgacacctggtgtcaacgg 24389661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 30661451 - 30661500
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  30661451 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 30661500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 37949661 - 37949612
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  37949661 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 37949612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 26636158 - 26636110
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  26636158 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 26636110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 7668535 - 7668489
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  7668535 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 7668489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 19067693 - 19067631
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||||||||||||||||||||| ||||||||||||||  ||||| ||||| || | |||||||    
T  19067693 aacggttgagatttggtgtcaacgaatccgttgacacgtggtgtcaacggatcctgtatatat 19067631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 25342550 - 25342504
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  25342550 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 25342504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 25343356 - 25343310
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  25343356 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 25343310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 46428240 - 46428194
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  46428240 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 46428194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 3028029 - 3027984
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaa 149  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||||    
T  3028029 acggttgagatttggtgtcaacgaattcgttgacacctggtgttaa 3027984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 3029195 - 3029256
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    ||||||| ||||||||||||| |||| |||||||||| ||||| ||||| || |||||||||    
T  3029195 acggttgggatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatatatat 3029256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 25599078 - 25599029
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||| |||||    
T  25599078 aacgattgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 25599029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 3772523 - 3772571
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  3772523 acggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacgg 3772571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 26636857 - 26636893
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26636857 acggttgagatttggtgtcaacgaatccgttgacacc 26636893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 21496977 - 21497016
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  21496977 taaacggttgagatttggtgtcaacgaattcgttgacacc 21497016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 30660643 - 30660600
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  30660643 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 30660600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 37950469 - 37950512
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  37950469 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 37950512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 27948499 - 27948453
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  27948499 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 27948453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 31954289 - 31954327
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacacca 141  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  31954289 aacggttaagatttggtgtcaacgaatccgttgacacca 31954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 43065120 - 43065174
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| || | |||||||    
T  43065120 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcttttatatat 43065174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 13785597 - 13785638
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||| ||||||||||||||| ||||| |||||    
T  13785597 agatttggtgtcaacgaatccgttgacacctggtgtcaacgg 13785638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 14305138 - 14305109
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||||||||||||    
T  14305138 agatttggtgtcaatgaatccgttgacacc 14305109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 19068391 - 19068440
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||| |||||||||||| |||| |||||||||| ||||| |||||    
T  19068391 aacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacgg 19068440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 40273616 - 40273567
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||| |||| | |||||||| ||||| |||||    
T  40273616 aacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacgg 40273567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 18977768 - 18977808
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||||||||||||| || ||||||||||||||| |||||    
T  18977768 ggttgagatttggtgttaacgaatccgttgacacctggtgt 18977808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 23889899 - 23889867
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgaca 138  Q
    ||||||||||||||||||| |||||||||||||    
T  23889899 ggttgagatttggtgtcaacgaatccgttgaca 23889867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 23902094 - 23902062
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgaca 138  Q
    ||||||||||||||||||| |||||||||||||    
T  23902094 ggttgagatttggtgtcaacgaatccgttgaca 23902062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 24581099 - 24581063
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacac 139  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  24581099 aacgcttgagatttggtgtcaacgaatccgttgacac 24581063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 25599816 - 25599864
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| ||||||||||||||||||||||  |||||||| ||||| |||||    
T  25599816 acggatgagatttggtgtcaatgaatctattgacacctggtgtcaacgg 25599864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 45099890 - 45099938
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| | |||||||||||| ||||||||||||||| ||||| |||||    
T  45099890 acggttaaaatttggtgtcaacgaatccgttgacacctggtgtcaacgg 45099938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 23856690 - 23856643
Alignment:
Q  105 cggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23856690 cggttgagatttggtgtcaatcaatccgttgacaccaggtgtcaacgg 23856643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 24933890 - 24933844
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||    
T  24933890 ggttgagatttggtgtcaatgaattcgttgacaccaggtgtcaacgg 24933844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 11750314 - 11750271
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  11750314 aacggttgagatttggtgtcaacgaatccgttgacacctggtgt 11750271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 36237690 - 36237639
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||| |||||    
T  36237690 taaatggttgaaatttggtgtcaatgaatccgttgacacctggtgtcaacgg 36237639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 1297121 - 1297167
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  1297121 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 1297167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 9275640 - 9275594
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  9275640 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 9275594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 29719500 - 29719454
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  29719500 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 29719454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 8542543 - 8542580
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8542543 aacggttgagatttggtgtcaacgaatccgttgacacc 8542580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 22560564 - 22560600
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| |||||||||||||||    
T  22560564 acggttgagatttggtgtcaacgaatccgttgacacc 22560600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 42182611 - 42182659
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| |||||    
T  42182611 acggttgagatttggtgtcaacgaatcccttgacacctggtgtcaacgg 42182659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 15774256 - 15774197
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||||||||||||||||||  ||| |||||||||||||||| ||||| || ||| |||||    
T  15774256 ggttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcctatctatat 15774197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 18174663 - 18174702
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  18174663 taaacggttgagatttggtgtcaacgaattcgttgacacc 18174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 1296433 - 1296387
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  1296433 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 1296387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 9276328 - 9276374
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  9276328 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 9276374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 8670711 - 8670756
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    ||||| || |||||||||| ||||| ||||||||||||||||||||    
T  8670711 ggttgtgaattggtgtcaacgaatctgttgacaccaggtgttaacg 8670756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 22559914 - 22559877
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacca 141  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  22559914 acggttgagatttggtgtcaacgaatctgttgacacca 22559877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 40252070 - 40252033
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaa 149  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  40252070 gatttggtgtcaacgaatccgttgacacctggtgttaa 40252033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 8713488 - 8713536
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggtt 154  Q
    ||||| |||||||||||||| | || ||||||||| |||||||||||||    
T  8713488 ggttgggatttggtgtcaataactctgttgacacctggtgttaacggtt 8713536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 11007285 - 11007245
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  11007285 ggttgagatttagtgtcaacgaatccgttgacacctggtgt 11007245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 22301863 - 22301927
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggttcgtatatatat 165  Q
    |||| |||| |||||||||||||| |||| |||||||||| ||||| ||||| || ||| |||||    
T  22301863 taaatggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctatat 22301927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 23857028 - 23857068
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||  |||||||||||||||||||| |||||    
T  23857028 gatttggtgtcaaccaatccgttgacaccaggtgtcaacgg 23857068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 26588228 - 26588268
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| |||||| ||||||||||||| |||||||||||||    
T  26588228 gatttgatgtcaacgaatccgttgacatcaggtgttaacgg 26588268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 29512423 - 29512379
Alignment:
Q  108 ttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||||  ||| |||||||||||||||| |||||    
T  29512423 ttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacgg 29512379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 10171331 - 10171283
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  10171331 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 10171283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 26529509 - 26529557
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  26529509 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 26529557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 8488525 - 8488482
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  8488525 aacggttgagatttggtgtcaacgaatccgttgacacctggtgt 8488482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 10171962 - 10172010
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  10171962 acggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacgg 10172010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 26528878 - 26528830
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  26528878 acggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacgg 26528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 3623233 - 3623194
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  3623233 taaacggttgagatttggtgtcaaagaattcgttgacacc 3623194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 19323033 - 19322990
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  19323033 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 19322990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 11434455 - 11434501
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||||||||||||   |||||||||||    
T  11434455 ggttgagatttggtgtcaacgaatccgttgacatttggtgttaacgg 11434501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 19323765 - 19323811
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  19323765 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacgg 19323811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 19654028 - 19653983
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||| |||||||||||||| || ||| ||||||||||||||    
T  19654028 taaacggttaagatttggtgtcaacgagtccattgacaccaggtgt 19653983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 33435388 - 33435347
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||| ||||||||| ||||||||||| |||||    
T  33435388 agatttggtgtcaacgaatccgttaacaccaggtgtcaacgg 33435347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 19311830 - 19311870
Alignment:
Q  111 agatttggtgtcaatgaatccgttgacaccaggtgttaacg 151  Q
    |||||||||||||| ||||||||||||||| ||||| ||||    
T  19311830 agatttggtgtcaacgaatccgttgacacctggtgtcaacg 19311870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 38576300 - 38576346
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  38576300 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 38576346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 11686960 - 11687008
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||| ||||||| |||| |||||||||||||||| |||||    
T  11686960 acggttgagatttagtgtcaacgaattcgttgacaccaggtgtcaacgg 11687008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 8372960 - 8372921
Alignment:
Q  113 atttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  8372960 atttggtgtcaacgaatccgttgacaccaggtgtcaacgg 8372921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 41974691 - 41974648
Alignment:
Q  109 tgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  41974691 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacgg 41974648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 31602072 - 31602030
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||||||||||||||||| |||| |||||||||| |||||    
T  31602072 acggttgagatttggtgtcaacgaattcgttgacacctggtgt 31602030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 37064872 - 37064830
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgt 146  Q
    ||||||| |||||||||||||||||| |||||||||| |||||    
T  37064872 acggttgtgatttggtgtcaatgaattcgttgacacctggtgt 37064830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 37732872 - 37732834
Alignment:
Q  114 tttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  37732872 tttggtgtcaacgaatccgttgacaccaggtgtcaacgg 37732834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 3043290 - 3043250
Alignment:
Q  112 gatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  3043290 gatttggtgtcaatgaatttgttgacaccaggtgtcaacgg 3043250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 8298303 - 8298267
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacacc 140  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  8298303 acggttgagatttggtgtcaacgaatccgttaacacc 8298267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 26654374 - 26654422
Alignment:
Q  104 acggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    |||||| |||||||||||||| |||||| |||||||| ||||| |||||    
T  26654374 acggttaagatttggtgtcaacgaatccattgacacctggtgtcaacgg 26654422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 38628309 - 38628257
Alignment:
Q  101 taaacggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacggt 153  Q
    ||||||||| |||||| ||||||| ||||||||||| ||| ||||| ||||||    
T  38628309 taaacggttaagattttgtgtcaacgaatccgttgatacctggtgtcaacggt 38628257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 23724 - 23759
Alignment:
Q  103 aacggttgagatttggtgtcaatgaatccgttgaca 138  Q
    |||||||||||||||||||||| |||||||||||||    
T  23724 aacggttgagatttggtgtcaacgaatccgttgaca 23759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 26645 - 26599
Alignment:
Q  106 ggttgagatttggtgtcaatgaatccgttgacaccaggtgttaacgg 152  Q
    ||||| ||||||||||||| ||||||||||||||| ||||| |||||    
T  26645 ggttgtgatttggtgtcaacgaatccgttgacacctggtgtcaacgg 26599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University