View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15550_low_16 (Length: 286)

Name: NF15550_low_16
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15550_low_16
NF15550_low_16
[»] chr3 (2 HSPs)
chr3 (1-270)||(24219655-24219924)
chr3 (68-268)||(16350362-16350562)
[»] chr1 (6 HSPs)
chr1 (5-269)||(10129448-10129712)
chr1 (5-208)||(41315641-41315844)
chr1 (71-183)||(17250710-17250822)
chr1 (63-149)||(4260799-4260885)
chr1 (63-149)||(4264421-4264507)
chr1 (100-147)||(19489683-19489730)
[»] chr6 (36 HSPs)
chr6 (5-270)||(28927406-28927671)
chr6 (16-212)||(29928641-29928837)
chr6 (5-267)||(29349022-29349284)
chr6 (2-270)||(24730165-24730433)
chr6 (5-253)||(24886945-24887193)
chr6 (12-206)||(29902630-29902824)
chr6 (13-270)||(24711448-24711705)
chr6 (5-212)||(24264176-24264383)
chr6 (5-204)||(29834591-29834790)
chr6 (5-204)||(29866025-29866224)
chr6 (5-206)||(29881809-29882010)
chr6 (5-206)||(29908965-29909166)
chr6 (5-212)||(24272371-24272578)
chr6 (5-267)||(29366845-29367107)
chr6 (15-212)||(29886665-29886862)
chr6 (5-198)||(29946014-29946207)
chr6 (79-270)||(29073073-29073264)
chr6 (79-270)||(29105646-29105837)
chr6 (5-212)||(29897450-29897657)
chr6 (59-206)||(25450282-25450429)
chr6 (44-270)||(24890709-24890935)
chr6 (71-212)||(29211568-29211709)
chr6 (8-212)||(29905021-29905225)
chr6 (71-212)||(29893921-29894062)
chr6 (85-162)||(31000442-31000519)
chr6 (71-211)||(29084387-29084527)
chr6 (5-184)||(29876221-29876400)
chr6 (4-195)||(21161048-21161239)
chr6 (12-211)||(29098712-29098911)
chr6 (5-147)||(30578192-30578334)
chr6 (91-211)||(29115630-29115750)
chr6 (17-186)||(30028532-30028701)
chr6 (63-209)||(24941571-24941717)
chr6 (63-208)||(24934039-24934184)
chr6 (5-165)||(15727592-15727752)
chr6 (4-195)||(29950320-29950511)
[»] chr2 (1 HSPs)
chr2 (79-267)||(15063374-15063562)
[»] scaffold0237 (1 HSPs)
scaffold0237 (12-212)||(21711-21911)
[»] scaffold0054 (1 HSPs)
scaffold0054 (84-206)||(54204-54326)
[»] scaffold0572 (1 HSPs)
scaffold0572 (68-183)||(2628-2743)
[»] scaffold1840 (1 HSPs)
scaffold1840 (68-182)||(807-921)
[»] scaffold0014 (2 HSPs)
scaffold0014 (68-207)||(136747-136886)
scaffold0014 (7-174)||(105164-105331)
[»] scaffold0654 (1 HSPs)
scaffold0654 (136-207)||(1775-1846)
[»] scaffold0652 (1 HSPs)
scaffold0652 (140-207)||(5945-6012)
[»] scaffold0308 (1 HSPs)
scaffold0308 (68-207)||(8368-8507)
[»] scaffold0051 (1 HSPs)
scaffold0051 (140-207)||(51063-51130)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-195)||(44367-44483)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24219655 - 24219924
Alignment:
Q  1 atgtaacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaacc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  24219655 atgtaacaaaccaattgcatctttcaattgacccataatgcataaaccacaaattaaagtattataagtgacaacagtaggacaaattctcttagcaacc 24219754  T
Q  101 atttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcc 200  Q
    |||||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||| || ||||||||||||    
T  24219755 atttcagaatagaaatcaaaagcatcgttaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatcaagtcgaaccaatttcc 24219854  T
Q  201 catcaattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaaggt 270  Q
    |||||||||||| ||  | ||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  24219855 catcaattcgtctcagcatttctaaggcagcttttgtttgtccaactttacataacccgttgatcaaggt 24219924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 16350562 - 16350362
Alignment:
Q  68 gtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgt 167  Q
    ||||||||||| |||  |||||||||  ||| ||||||  |||||||| || | |||||  | || |||||||||||||||||||||||||| || |||     
T  16350562 gtgacaacagtgggaggaattctctttacaatcatttctgaatataaaccataggcatcagttactagtttatctttacacaaaccatcaatgattgtgc 16350463  T
Q  168 tatacatcacaacatcag-gttgaaccaatttcccatcaattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatca 266  Q
    ||||||| || ||||  | |||| ||||||||||| |||||| ||| ||| | || |||  | |||||||||||||| | |||||| || || |||||||    
T  16350462 tatacattaccacattggtgttg-accaatttcccttcaatttgtctcaacacttgtaaggcggctcttgtttgtcccattttacacaatccattgatca 16350364  T
Q  267 ag 268  Q
    ||    
T  16350363 ag 16350362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 10129712 - 10129448
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||||||||||||| ||| || ||| || |||| ||||||  ||||||| |||||||||  |||| ||||||||||||| | |||||    
T  10129712 aacaaaccaattgcatctttcaattgacccacaacgcaaaagccactaattaaattattataagtgacaacatcaggaaaaattctcttagcgatcattt 10129613  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||| ||||||||| ||||||||||||||||| |||| ||||||||| ||| || ||||||| || |||| ||| ||||| | |||||||||    
T  10129612 cagaatataaattaaaagcatcattaacaagtttatctttgcacataccatcaatgatcatggtatacattaccacattaggctgaacaattttcccatc 10129513  T
Q  205 aattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaagg 269  Q
    || ||||| ||  ||||| |   |||||||||||| |||||||||||| || || || |||||||    
T  10129512 aactcgtctcagcaattccagggcagctcttgtttctccaactttacacaatccattaatcaagg 10129448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 41315844 - 41315641
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    |||||||||| |||||||||||||||| | |||||||| || ||| | ||||  | |||  | ||| |||||  |||| ||||| |||  |||| |||||    
T  41315844 aacaaaccaaatgcatctttcaattgaccaataatgcaaaatccatatattagagaattgaaagtggcaacatcaggagaaattttctctgcaatcattt 41315745  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcag-gttgaaccaatttcccat 203  Q
    || ||||||| ||| ||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| || ||||| | |||| ||||||||||| |    
T  41315744 cagaatataactcataagcatcatttacaagcttatctttacacaaaccatcaattattgtgttatacattactacatcggagttg-accaatttccctt 41315646  T
Q  204 caatt 208  Q
    |||||    
T  41315645 caatt 41315641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 17250822 - 17250710
Alignment:
Q  71 acaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttat 170  Q
    |||||| ||||| |||  |||||  ||| ||||||| ||||||||||||| |||||  | ||||||||||||||||| |||||||||||||| || ||||    
T  17250822 acaacattaggaaaaaccctcttctcaaacatttcacaatataaatcaaacgcatccctcacaagtttatctttacataaaccatcaataatagtattat 17250723  T
Q  171 acatcacaacatc 183  Q
    |||| ||||||||    
T  17250722 acattacaacatc 17250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 4260799 - 4260885
Alignment:
Q  63 tatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacaca 149  Q
    |||| ||||||||| ||||| ||||||   |||||||||||||| ||||||||||||||||||| ||||||| | ||||||| ||||    
T  4260799 tataagtgacaacattaggagaaattccgctagcaaccatttcataatataaatcaaaagcatcattaacaaatgtatctttgcaca 4260885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 4264421 - 4264507
Alignment:
Q  63 tatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacaca 149  Q
    |||| ||||||||| ||||| ||||||   |||||||||||||| ||||||||||||||||||| ||||||| | ||||||| ||||    
T  4264421 tataagtgacaacattaggagaaattccgctagcaaccatttcataatataaatcaaaagcatcattaacaaatgtatctttgcaca 4264507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 19489730 - 19489683
Alignment:
Q  100 catttcaaaatataaatcaaaagcatcgttaacaagtttatctttaca 147  Q
    ||||||| ||||||||||||||||||| || ||| |||||||||||||    
T  19489730 catttcagaatataaatcaaaagcatcatttacatgtttatctttaca 19489683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 28927406 - 28927671
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||| ||| ||||||| | | | |||||| ||||||| |||||| | | | || || |||||    ||| |||| | ||||| ||||||||    
T  28927406 aacaaaccaattgaatcattcaatttaccaagaatgcaaaaaccactaattaaagcactgtaagtaacaacttcgggagaaatccccttagaaaccattt 28927505  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || |||||||||||||||| || |||||||||||||||||||||| || |||||||||| |  | ||||| || ||||||||||||||||||||||||||    
T  28927506 cagaatataaatcaaaagcttcattaacaagtttatctttacacatactatcaataatcatagtgtacattaccacatcaggttgaaccaatttcccatc 28927605  T
Q  205 aattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaaggt 270  Q
    || ||||| ||  ||||  ||  | |||||||||||||||||||||||||| ||||||||||||||    
T  28927606 aactcgtctcagcaattgcaaagctgctcttgtttgtccaactttacataatccgttgatcaaggt 28927671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 29928837 - 29928641
Alignment:
Q  16 tgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaa 115  Q
    |||||||||||||| | | | |||||| || |||| |||||| | | |||| ||||||||| ||||| |||||||||| |||||||||||| ||||||||    
T  29928837 tgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacattaggagaaattctctttgcaaccatttcagaatataaa 29928738  T
Q  116 tcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaattcgtc 212  Q
    ||||||||||| |||||| ||||||||||||||| |||||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||| |||||    
T  29928737 tcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacatcaggctgaacaaattttccatcaaatcgtc 29928641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 29349022 - 29349284
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||| ||||||| | | | |||||| ||||||| |||||| | | | || || ||||||   ||| |||| | ||||| ||||||||    
T  29349022 aacaaaccaattgcatcattcaatttaccaagaatgcaaaaaccactaattaaagcactgtaagtaacaacatcgggagaaatccccttagaaaccattt 29349121  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || |||||||||||||||| || |||||||||||| |||| ||||  | ||||||||| ||||| ||||| || |||| ||||||||||||||| |||||    
T  29349122 cagaatataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattaccacattaggttgaaccaatttaccatc 29349221  T
Q  205 aattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaa 267  Q
    || ||||| ||  ||||  ||  | || |||||||||||||||||||||||||| ||||||||    
T  29349222 aactcgtctcagcaattgcaaagctgcacttgtttgtccaactttacataacccattgatcaa 29349284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 24730433 - 24730165
Alignment:
Q  2 tgtaacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaacca 101  Q
    ||||||||||||| ||| |||||||||||| |||||||||| || ||| |||||||  ||||| | |||| | ||  |||| ||||||||||||||||||    
T  24730433 tgtaacaaaccaactgcctctttcaattgacccataatgcagaagccataaattaaactattacaagtgaaatcatcaggagaaattctcttagcaacca 24730334  T
Q  102 tttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttccc 201  Q
    ||| | ||||||||||||||||||| |||||||| ||| |||| |||| |  |||||||||| |||| ||||| ||  ||| ||| ||||| ||||||||    
T  24730333 tttgagaatataaatcaaaagcatcattaacaagcttagctttgcacatattatcaataatcatgttgtacattaccgcattaggctgaactaatttccc 24730234  T
Q  202 atcaattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaaggt 270  Q
    ||||| ||||  ||  ||||  |   ||||| || || |||||||||||||||| ||||| ||||||||    
T  24730233 atcaactcgtttcagcaattggagagcagctgttattcgtccaactttacataatccgttaatcaaggt 24730165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 24886945 - 24887193
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||| ||||||| ||| ||||||| | | | |||||| ||||||| |||||| | | | || |||| ||||  |||| |||||||||| || |||||||    
T  24886945 aacaacccaattgtatcattcaatttaccaacaatgcaaaaaccactaattaaagcactgtaagtgataacatcaggagaaattctcttcgcgaccattt 24887044  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| |||||||||||| |||| |||| |||||||||||| ||| | ||||| |  |||| ||||||||||||||| |||||    
T  24887045 cagaatataaatcaaaagcatcattaacaagtttacctttgcacataccatcaataatggtgctgtacattatcacattaggttgaaccaatttgccatc 24887144  T
Q  205 aattcgtcccaagaattctaacacagctcttgtttgtccaactttacat 253  Q
    || ||||| ||  |||| ||   ||||||||||||| ||||||||||||    
T  24887145 aactcgtctcagcaattgtagagcagctcttgtttgcccaactttacat 24887193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 29902824 - 29902630
Alignment:
Q  12 caattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaata 111  Q
    ||||||||||| ||| || | | | |||||| || |||| |||||| | | |||| ||||||||| ||||| || ||||| ||| |||||||||||||||    
T  29902824 caattgcatctctcagtttaccaacaatgcaaaatccactaattaaagcactataagtgacaacattaggagaagttctcctagaaaccatttcaaaata 29902725  T
Q  112 taaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaa 206  Q
    ||||||||||||||| ||||||| |||| |||| |||| ||||||||||||||| |||||||| || |||| ||| ||||||||||||| |||||    
T  29902724 taaatcaaaagcatcattaacaaatttacctttgcacataccatcaataatcgtattatacattaccacattaggctgaaccaatttccgatcaa 29902630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 24711705 - 24711448
Alignment:
Q  13 aattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatat 112  Q
    ||||||||| ||||||| | | | |||||| | ||||| |||||| | | |||| |||||||||  ||| ||||||||||||||| |||||||| |||||    
T  24711705 aattgcatcattcaatttaccaacaatgcaaacaccactaattaaagcactataagtgacaacatcagggcaaattctcttagcagccatttcagaatat 24711606  T
Q  113 aaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaattcgtc 212  Q
    |||||||| ||||| ||||||||||||| ||| || |||| ||||||||| ||| | ||||| || |||| ||||||||||||||||||||  |  ||||    
T  24711605 aaatcaaatgcatcattaacaagtttatatttgcataaactatcaataattgtggtgtacattaccacattaggttgaaccaatttcccattgacccgtc 24711506  T
Q  213 ccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaaggt 270  Q
     ||| |||||   | |||||||||||   ||||||||||| ||||| || ||||||||    
T  24711505 tcaacaattcctgcgcagctcttgttgcaccaactttacacaacccattaatcaaggt 24711448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 24264176 - 24264383
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||||||||||| | | | |||||| || |||| |||||| | | |||| ||||||| | | | | |||||||| ||| ||||||||    
T  24264176 aacaaaccaattgcatctttcaatttaccaacaatgcaaaagccactaattaaagcactataagtgacaatattggaagaaattctcctagaaaccattt 24264275  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| ||||||  |||||||||||||| || ||||||||||||  | ||||| || |||||| | ||||||||||| |||||    
T  24264276 cagaatataaatcaaaagcatcattaacatttttatctttacacatactatcaataatcgtactgtacattaccacatcaagctgaaccaattttccatc 24264375  T
Q  205 aattcgtc 212  Q
    || |||||    
T  24264376 aactcgtc 24264383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 29834790 - 29834591
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||||||||||| | | | |||||| || |||| ||| || | ||| || |||| ||||  |||  |||||||||||| ||||||||    
T  29834790 aacaaaccaattgcatctttcaatttaccaacaatgcaaaagccactaatcaaagcattgtaagtgaaaacatcaggggaaattctcttagaaaccattt 29834691  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||| || || ||||| || |||  ||| |||||||||||||||||    
T  29834690 cagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacactaggctgaaccaatttcccatc 29834591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 29866224 - 29866025
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||||||||||| | | | |||||| || |||| ||| || | ||| || |||| ||||  |||  |||||||||||| ||||||||    
T  29866224 aacaaaccaattgcatctttcaatttaccaacaatgcaaaagccactaatcaaagcattgtaagtgaaaacatcaggggaaattctcttagaaaccattt 29866125  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||| || || ||||| || |||  ||| |||||||||||||||||    
T  29866124 cagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacactaggctgaaccaatttcccatc 29866025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 29882010 - 29881809
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    |||||| |||||||||||||||||| | | | |||||| || |||| |||||| | | |||| ||||||||| ||||| |||||||||| ||| ||||||    
T  29882010 aacaaatcaattgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacattaggagaaattctctttgcagccattt 29881911  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| |||||| |||||||||||||||  | |||||||||||   | ||||| ||  ||||| | ||||||||||| |||||    
T  29881910 cagaatataaatcaaaagcatcattaacatgtttatctttacacatgctatcaataatcgaactgtacattaccgcatcaagctgaaccaattttccatc 29881811  T
Q  205 aa 206  Q
    ||    
T  29881810 aa 29881809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 29909166 - 29908965
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    |||||| |||||||||||||||||| | | | |||||| || |||| |||||| | | |||| ||||||||| ||||| |||||||||| ||| ||||||    
T  29909166 aacaaatcaattgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacattaggagaaattctctttgcagccattt 29909067  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| |||||| |||||||||||||||  | |||||||||||   | ||||| ||  ||||| | ||||||||||| |||||    
T  29909066 cagaatataaatcaaaagcatcattaacatgtttatctttacacatgctatcaataatcgaactgtacattaccgcatcaagctgaaccaattttccatc 29908967  T
Q  205 aa 206  Q
    ||    
T  29908966 aa 29908965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 24272371 - 24272578
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||||||||||| | | | |||||| ||||||  |||||| | |||||| |||  ||||  |||  |||||||||||| ||||||||    
T  24272371 aacaaaccaattgcatctttcaatttaccaacaatgcaaaaaccattaattaaagcattataagtgttaacatcagggaaaattctcttagaaaccattt 24272470  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| ||| ||||||||||||| ||||  | ||||||||| ||||| ||||| || |  | |||||||| |||||| |||||    
T  24272471 cagaatataaatcaaaagcatcattatcaagtttatctttgcacatgctatcaataatggtgttgtacattaccaagttaggttgaagcaatttaccatc 24272570  T
Q  205 aattcgtc 212  Q
    || |||||    
T  24272571 aactcgtc 24272578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 29366845 - 29367107
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    |||||| || |||||||||||| || | | | |||||| || |||| |||||| | ||| || || ||||||   ||| |||| | ||||| ||||||||    
T  29366845 aacaaatcagttgcatctttcattttaccgacaatgcaaaagccactaattaaagcattgtaagtaacaacatcgggagaaatccccttagaaaccattt 29366944  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || |||||||||||||||| || |||||||| ||| |||| ||||  | ||||||||| ||||| ||||| || |||| ||||||||||||||| |||||    
T  29366945 cagaatataaatcaaaagcttcattaacaagcttaactttgcacatgctatcaataatggtgttgtacattaccacattaggttgaaccaatttaccatc 29367044  T
Q  205 aattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaa 267  Q
    || ||||| ||  ||||  ||  | || |||||||||||||||||||||||||| ||||||||    
T  29367045 aactcgtctcagcaattgcaaagctgcacttgtttgtccaactttacataacccattgatcaa 29367107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 29886862 - 29886665
Alignment:
Q  15 ttgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataa 114  Q
    ||||||||||||||| | | | |||||| || |||| |||||| | ||| || |||| ||||   ||  |||||||||||| | |||||||| |||||||    
T  29886862 ttgcatctttcaatttaccaacaatgcaaaagccactaattaaagcattgtaagtgaaaacatcggggaaaattctcttagaagccatttcagaatataa 29886763  T
Q  115 atcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaattcgtc 212  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| || || ||||| || |||||||| ||||||||||| ||||||| |||||    
T  29886762 atcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacatcaggctgaaccaattttccatcaactcgtc 29886665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 29946207 - 29946014
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    |||||||||| |||||| ||||||||| ||| |||||| || |||  |||||| || || || || ||||   | ||| |||||||||||| ||||||||    
T  29946207 aacaaaccaaatgcatcattcaattgacccacaatgcaaaagccatgaattaaagtgttgtaagttacaatgttcggagaaattctcttagtaaccattt 29946108  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaattt 198  Q
    || |||||||||||| | |||| ||||||||||||||||| |||| |||||||||||||    ||||||| || ||||||||||||||||||||    
T  29946107 cagaatataaatcaacaacatcattaacaagtttatctttgcacataccatcaataatcacactatacattaccacatcaggttgaaccaattt 29946014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 270
Target Start/End: Complemental strand, 29073264 - 29073073
Alignment:
Q  79 aggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcaca 178  Q
    |||| |||||| || || |||||||||| |||||||||||||||| || |||||||||||| |||| ||||  | ||||||||| ||||| ||||| ||     
T  29073264 aggagaaattccctcagaaaccatttcagaatataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattacc 29073165  T
Q  179 acatcaggttgaaccaatttcccatcaattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaaggt 270  Q
    |||| ||||||||||||||| ||||| | ||||| ||  ||||  ||  | ||||||| ||||||||||||||||||||| || ||||||||    
T  29073164 acattaggttgaaccaatttaccatcgactcgtctcagcaattgcaaagctgctcttgcttgtccaactttacataacccattaatcaaggt 29073073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 270
Target Start/End: Complemental strand, 29105837 - 29105646
Alignment:
Q  79 aggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcaca 178  Q
    |||| |||||| || || |||||||||| |||||||||||||||| || |||||||||||| |||| ||||  | ||||||||| ||||| ||||| ||     
T  29105837 aggagaaattccctcagaaaccatttcagaatataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattacc 29105738  T
Q  179 acatcaggttgaaccaatttcccatcaattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaaggt 270  Q
    |||| ||||||||||||||| ||||| | ||||| ||  ||||  ||  | ||||||| ||||||||||||||||||||| || ||||||||    
T  29105737 acattaggttgaaccaatttaccatcgactcgtctcagcaattgcaaagctgctcttgcttgtccaactttacataacccattaatcaaggt 29105646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 29897657 - 29897450
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||||||||||||||||| | | | |||||| || |||  |||||| | | | || || ||||||   ||| |||||||||| ||||||||||    
T  29897657 aacaaaccaattgcatctttcaatttaccaacaatgcaaaagccaataattaaagcactgtaagtaacaacaccgggataaattctctttgcaaccattt 29897558  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatc 204  Q
    || ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||  || || ||||| ||  ||| | | ||||||||||| |||||    
T  29897557 cagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcaataacggtattgtacattaccgcattaagctgaaccaatttaccatc 29897458  T
Q  205 aattcgtc 212  Q
    || |||||    
T  29897457 aactcgtc 29897450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 25450429 - 25450282
Alignment:
Q  59 gtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaa 158  Q
    ||||| || |||| |||| ||||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||  | |||||    
T  25450429 gtattgtaagtgataacattaggagaaatcctcttagcaagcatttcataatataaatcaaaagcaacgttaacaagtttatctttacacattctatcaa 25450330  T
Q  159 taatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaa 206  Q
    ||| |  ||| ||||| || |||| ||| ||||||||||| |||||||    
T  25450329 taagcacgttgtacattactacatgaggctgaaccaatttaccatcaa 25450282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 24890709 - 24890935
Alignment:
Q  44 aaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctt 143  Q
    ||||||| |||||| | ||| || |||| ||||  ||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||| |||    
T  24890709 aaaccactaattaaagcattgtaagtgaaaacatcagggcaaattctcttagcaaccatttgagaatataaatcaaaagcatcattaacaagcttagctt 24890808  T
Q  144 tacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaattcgtcccaagaattctaacacagctcttgtttgtcc 243  Q
    | |||| |  |||||||||| |||| ||||| ||  ||| ||| ||||| ||||||||||||| ||||  ||  ||||  |   ||||| || || ||||    
T  24890809 tgcacatattatcaataatcatgttgtacattaccgcattaggctgaactaatttcccatcaactcgtttcagcaattggagagcagctgttattcgtcc 24890908  T
Q  244 aactttacataacccgttgatcaaggt 270  Q
    |||||||||||| ||||| ||||||||    
T  24890909 aactttacataatccgttaatcaaggt 24890935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 29211568 - 29211709
Alignment:
Q  71 acaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttat 170  Q
    |||||| | ||| |||||| ||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||| ||  | |    
T  29211568 acaacattgggagaaattcccttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtactgt 29211667  T
Q  171 acatcacaacatcaggttgaaccaatttcccatcaattcgtc 212  Q
    |||| || |||| ||| ||||||||||| ||||||| |||||    
T  29211668 acattaccacattaggctgaaccaatttaccatcaactcgtc 29211709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 29905225 - 29905021
Alignment:
Q  8 aaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaa 107  Q
    |||||||||||||||||||||| | | | |||||| ||  ||| |||||| | ||| || |||| || |  |||  |||||||||||| |||||||| |     
T  29905225 aaaccaattgcatctttcaatttaccaacaatgcaaaagtcactaattaaagcattgtaagtgagaatatcaggggaaattctcttagaaaccattttag 29905126  T
Q  108 aatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaat 207  Q
    ||||||||||||||||||  |||||| ||||||||||||||| || |||||||||||   | ||| | || |||||||||||||||| ||| |||||||     
T  29905125 aatataaatcaaaagcatgattaacatgtttatctttacacatactatcaataatcgcaatgtactttaccacatcaggttgaaccagttttccatcaac 29905026  T
Q  208 tcgtc 212  Q
    |||||    
T  29905025 tcgtc 29905021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 29894062 - 29893921
Alignment:
Q  71 acaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttat 170  Q
    |||||| | ||| |||||| ||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||| ||  | |    
T  29894062 acaacattgggagaaattcccttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtactgt 29893963  T
Q  171 acatcacaacatcaggttgaaccaatttcccatcaattcgtc 212  Q
    |||| || |||| ||| |||||||| || ||||||| |||||    
T  29893962 acattaccacattaggctgaaccaaattaccatcaactcgtc 29893921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 31000442 - 31000519
Alignment:
Q  85 aattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataat 162  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| || |||| |||||||||    
T  31000442 aattctcttagcaaccatttcagaatataaatcaaaagcatcgttgacaagtttatatttgcataaactatcaataat 31000519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 29084527 - 29084387
Alignment:
Q  71 acaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttat 170  Q
    |||||| | ||| |||||| ||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||  || || |    
T  29084527 acaacattgggagaaattcccttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccataaataacggtattgt 29084428  T
Q  171 acatcacaacatcaggttgaaccaatttcccatcaattcgt 211  Q
    |||| ||  ||| | | ||||||||||| ||||||| ||||    
T  29084427 acattaccgcattaagctgaaccaatttaccatcaactcgt 29084387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 29876400 - 29876221
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||||||| |||||||||||  || ||| ||  || |||||| |||| | || |||||| || | ||||   ||| ||| |||||||||||||||||    
T  29876400 aacaaaccaatagcatctttcaaccgacccacaacacaaaaaccataaatcatcgcattataagtaaaaacatccggagaaactctcttagcaaccattt 29876301  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatca 184  Q
    ||  ||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||| | ||||||| || ||||||    
T  29876300 cagtatacaaatcaaacgcatcatcaacaagcttatctttacacaaaccattaataatcgcggtatacattaccacatca 29876221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 21161048 - 21161239
Alignment:
Q  4 taacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatt 103  Q
    ||||||| ||||||| | ||||| |||| ||| |||||| || ||| | ||||| |||||||| || || ||| ||||| | |||||| | |||||||||    
T  21161048 taacaaatcaattgcttgtttcatttgacccacaatgcaaaagccatatattaaagtattataggtaaccacattaggaaatattctcatggcaaccatt 21161147  T
Q  104 tcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaa 195  Q
    ||| |||||||||||||||||||  | ||||||||||| || || |||| || |||||| ||  | ||||| || |||| ||| ||||||||    
T  21161148 tcagaatataaatcaaaagcatcaattacaagtttatccttgcataaactataaataattgtactgtacatgaccacattaggctgaaccaa 21161239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 29098911 - 29098712
Alignment:
Q  12 caattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaata 111  Q
    ||||||||||||||| || | | | |||||| ||||||| |||||| | | | || || ||||||   ||| |||| | ||||| |||||||||| || |    
T  29098911 caattgcatctttcagtttaccaagaatgcaaaaaccactaattaaagcactgtaagtaacaacatcgggagaaatccccttagaaaccatttcagaaaa 29098812  T
Q  112 taaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaattcgt 211  Q
    |||||||||||| || |||||||||||| |||| ||||  | ||||||||| ||||| ||||| || |||| ||| |||||||| || ||||||| ||||    
T  29098811 taaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattaccacattaggctgaaccaaattaccatcaactcgt 29098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 30578192 - 30578334
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    ||||||| ||| ||||||| ||||||| ||| ||| || |||||| | ||||  ||||||||||||||||||  |||| ||||||||||  ||||||| |    
T  30578192 aacaaacgaatagcatcttccaattgacccacaatacaaaaaccatatattagagtattatacgtgacaacatcaggaaaaattctcttgacaaccatct 30578291  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttaca 147  Q
    || ||||||||||| | |||||    |||||||||||||||||    
T  30578292 cacaatataaatcatacgcatcaactacaagtttatctttaca 30578334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 29115750 - 29115630
Alignment:
Q  91 cttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttga 190  Q
    ||||| || ||||||| || ||||||||||||| || |||||||||||| |||| ||||  | ||||||||| ||||| ||||| || |||| ||| |||    
T  29115750 cttagaaatcatttcagaaaataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattaccacattaggctga 29115651  T
Q  191 accaatttcccatcaattcgt 211  Q
    ||||| || ||||||| ||||    
T  29115650 accaaattaccatcaactcgt 29115630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 30028701 - 30028532
Alignment:
Q  17 gcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaat 116  Q
    ||||||||||| ||| ||| ||| || |||||| | || |||||| |||| || |||||| | ||| ||||  ||||  ||||||||||| |||| || |    
T  30028701 gcatctttcaactgacccacaatacaaaaaccatatatcaacgtactataagtaacaacattcggaaaaatcttcttttcaaccatttcagaatacaact 30028602  T
Q  117 caaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcagg 186  Q
    || |||||||| | || |||||||| |||||||||| |||||| || ||  ||||||| || ||||||||    
T  30028601 cataagcatcggtcacgagtttatccttacacaaactatcaatgattgtagtatacattaccacatcagg 30028532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 24941717 - 24941571
Alignment:
Q  63 tatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataat 162  Q
    |||| |||||||||   ||| ||||||||||| ||| ||||||| || |||||||| | ||||   | ||||||||||| || ||||||| |||||||||    
T  24941717 tataagtgacaacatctggaaaaattctcttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgcacaaactatcaataat 24941618  T
Q  163 cgtgttatacatcacaacatcaggttgaaccaatttcccatcaattc 209  Q
     || || ||||| || |||| ||| ||||||||   |||||||||||    
T  24941617 tgtattgtacatgactacattaggctgaaccaacagcccatcaattc 24941571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 24934184 - 24934039
Alignment:
Q  63 tatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataat 162  Q
    |||| |||||||||   ||| ||||||||||| ||| ||||||| || |||||||| | ||||   | ||||||||||| || ||||||| |||||||||    
T  24934184 tataagtgacaacatctggaaaaattctcttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgcacaaactatcaataat 24934085  T
Q  163 cgtgttatacatcacaacatcaggttgaaccaatttcccatcaatt 208  Q
     || || ||||| || |||| ||| ||||||||   ||||||||||    
T  24934084 tgtattgtacatgactacattaggctgaaccaacagcccatcaatt 24934039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 15727592 - 15727752
Alignment:
Q  5 aacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccattt 104  Q
    |||||||||| ||| |||||||||||| | | |||||| || ||  ||||||| | |||  | |||| || | ||||| |||||||||| | || |||||    
T  15727592 aacaaaccaaatgcttctttcaattgaccaacaatgcaaaatccgtaaattaaagaattgaaagtgataatattaggagaaattctctttgtaatcattt 15727691  T
Q  105 caaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgt 165  Q
    || ||||||| ||| | |||||  | |||| ||||| ||||||||||| |||||| |||||    
T  15727692 cagaatataactcataggcatcagttacaaatttatgtttacacaaactatcaatgatcgt 15727752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 29950320 - 29950511
Alignment:
Q  4 taacaaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatt 103  Q
    ||||||||||| ||| ||||||| |||| ||| |||| | |||||| | ||||  ||||| || ||||  ||| |||||  |||| | ||| ||| ||||    
T  29950320 taacaaaccaactgcttctttcatttgacccaaaatggaaaaaccatatattagagtattgtaagtgatgacattaggatgaattttgttaacaatcatt 29950419  T
Q  104 tcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaa 195  Q
    ||| ||||||||||| |  ||||  ||||||| ||||||||||| | | | ||||| || ||||| ||||| || |||||||| | ||||||    
T  29950420 tcagaatataaatcatacccatcactaacaagcttatctttacagagagcgtcaatgattgtgttgtacataacgacatcaggcttaaccaa 29950511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 15063374 - 15063562
Alignment:
Q  79 aggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcaca 178  Q
    |||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||||| ||     
T  15063374 aggagaaattcttttagaaaccatttcacaatataaatcaaaagcatcgttaacaagtttatccttacacatactatcaataatcgtgctatacattacc 15063473  T
Q  179 acatcaggttgaaccaatttcccatcaattcgtcccaagaattctaacacagctcttgtttgtccaactttacataacccgttgatcaa 267  Q
    |||| |||  |||||||||| |||||||  |||| ||| |||| ||   | ||| ||||||  |||||| |||||||||| ||||||||    
T  15063474 acattaggccgaaccaattttccatcaacccgtctcaacaattgtacagctgcttttgtttcgccaactctacataacccattgatcaa 15063562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 21911 - 21711
Alignment:
Q  12 caattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttcaaaata 111  Q
    |||||||||||||||||| | | | |||||| || |||| |||||| | ||| || |||| ||||   ||  |||||||||||| |||| ||||| ||||    
T  21911 caattgcatctttcaatttaccaacaatgcaaaagccactaattaaagcattgtaagtgaaaacatcggggaaaattctcttagaaaccttttcagaata 21812  T
Q  112 taaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaattcgt 211  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||| ||||| || || ||||| || |||||||| ||||| ||||| |||||| |||||    
T  21811 taaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacatcaggctgaactaattttccatcatttcgt 21712  T
Q  212 c 212  Q
    |    
T  21711 c 21711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 54204 - 54326
Alignment:
Q  84 aaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcacaacatc 183  Q
    |||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||  || || ||||| ||  |||     
T  54204 aaattctctttgcaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttatacataccatcaataacggtattgtacattaccgcatt 54303  T
Q  184 aggttgaaccaatttcccatcaa 206  Q
    | | ||||||||||| |||||||    
T  54304 aagctgaaccaattttccatcaa 54326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 2743 - 2628
Alignment:
Q  68 gtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgt 167  Q
    ||||||||||||||| |||||||||| | || ||||||| ||||||| ||| | ||||| || |||||||||||||| |||||||||||||| || ||      
T  2743 gtgacaacagtaggagaaattctctttgtaatcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaatgattgtac 2644  T
Q  168 tatacatcacaacatc 183  Q
    ||||||| ||||||||    
T  2643 tatacattacaacatc 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1840 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 921 - 807
Alignment:
Q  68 gtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgt 167  Q
    ||||||||||||||| |||||||||| | || ||||||| ||||||| ||| | ||||| || |||||||||||||| |||||||||||||| || ||      
T  921 gtgacaacagtaggagaaattctctttgtaatcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaatgattgtac 822  T
Q  168 tatacatcacaacat 182  Q
    ||||||| |||||||    
T  821 tatacattacaacat 807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 136886 - 136747
Alignment:
Q  68 gtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgt 167  Q
    |||||||||  |||| ||||| |||| |||| ||||||| ||||||| ||| |||||||  | |||||||||||||||||||||| |||||||||  ||     
T  136886 gtgacaacatcaggagaaattgtctttgcaatcatttcagaatataactcataagcatcaattacaagtttatctttacacaaactatcaataattatgc 136787  T
Q  168 tatacatcacaacatcag-gttgaaccaatttcccatcaat 207  Q
    ||||||| || ||||| | |||| |||||||||||||||||    
T  136786 tatacattaccacatcggtgttg-accaatttcccatcaat 136747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 105164 - 105331
Alignment:
Q  7 caaaccaattgcatctttcaattgagccataatgcataaaccacaaattaacgtattatacgtgacaacagtaggacaaattctcttagcaaccatttca 106  Q
    |||||||| ||| |||||||||||| | | |||||| || ||| ||||||  | | || | ||||||||||||||| ||||| |||| | || |||||||    
T  105164 caaaccaaatgcttctttcaattgaccaacaatgcaaaacccataaattagagcactaaaagtgacaacagtaggagaaattttctttgtaatcatttca 105263  T
Q  107 aaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacat 174  Q
     | ||||| ||| | |||||  | |||||||||||||| ||||||| |||||| |  |||||||||||    
T  105264 gagtataactcatatgcatcacttacaagtttatctttgcacaaactatcaatgactgtgttatacat 105331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 1775 - 1846
Alignment:
Q  136 tttatctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaat 207  Q
    ||||||||||||||||| |||||| || ||| ||||||| || |||||||  | ||||||||||||||||||    
T  1775 tttatctttacacaaactatcaatgattgtgctatacattaccacatcagtgttaaccaatttcccatcaat 1846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 5945 - 6012
Alignment:
Q  140 tctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaat 207  Q
    ||||||||||||| |||||| || ||||||||||| |||||| |||  | ||||||||||||||||||    
T  5945 tctttacacaaactatcaatgattgtgttatacattacaacaccagtgttaaccaatttcccatcaat 6012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 8507 - 8368
Alignment:
Q  68 gtgacaacagtaggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgt 167  Q
    ||||||||||||||| ||||| |||| | || ||||||| ||||||| ||| | || ||| | || | ||| ||||||||||||| ||| || || ||||    
T  8507 gtgacaacagtaggagaaattgtctttgtaatcatttcagaatataactcatatgcctcggtcaccaatttctctttacacaaactatcgatgattgtgt 8408  T
Q  168 tatacatcacaacatcag-gttgaaccaatttcccatcaat 207  Q
    ||||||| || ||||| | |||| ||||||||||| |||||    
T  8407 tatacattaccacatcggtgttg-accaatttcccttcaat 8368  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 51063 - 51130
Alignment:
Q  140 tctttacacaaaccatcaataatcgtgttatacatcacaacatcaggttgaaccaatttcccatcaat 207  Q
    ||||||||||||| |||||| || ||| ||||||| || |||||||  | ||||||||||||||||||    
T  51063 tctttacacaaactatcaatgattgtgctatacattaccacatcagtgttaaccaatttcccatcaat 51130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 44367 - 44483
Alignment:
Q  79 aggacaaattctcttagcaaccatttcaaaatataaatcaaaagcatcgttaacaagtttatctttacacaaaccatcaataatcgtgttatacatcaca 178  Q
    |||| ||||| ||||| ||| ||||||| ||||||||||| |  ||||  ||||||| ||||||||||| | ||  ||||| || ||||| ||||| ||     
T  44367 aggataaattttcttaacaatcatttcagaatataaatcatacccatcactaacaagcttatctttacagagactgtcaatgattgtgttgtacataacg 44466  T
Q  179 acatcaggttgaaccaa 195  Q
    |||||||| | ||||||    
T  44467 acatcaggcttaaccaa 44483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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