View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15550_low_19 (Length: 278)

Name: NF15550_low_19
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15550_low_19
NF15550_low_19
[»] chr1 (7 HSPs)
chr1 (17-274)||(1524299-1524556)
chr1 (32-96)||(43297868-43297932)
chr1 (18-97)||(31325512-31325591)
chr1 (16-90)||(50451411-50451485)
chr1 (20-97)||(20284358-20284435)
chr1 (35-97)||(5193633-5193695)
chr1 (20-94)||(23464849-23464923)
[»] chr8 (2 HSPs)
chr8 (47-278)||(38347796-38348028)
chr8 (20-97)||(23133146-23133223)
[»] chr3 (5 HSPs)
chr3 (16-97)||(26433255-26433336)
chr3 (32-93)||(38647758-38647819)
chr3 (31-97)||(11896657-11896723)
chr3 (32-97)||(55025378-55025443)
chr3 (32-86)||(53608876-53608930)
[»] chr6 (2 HSPs)
chr6 (17-97)||(12646660-12646740)
chr6 (16-123)||(35232969-35233076)
[»] chr7 (1 HSPs)
chr7 (20-97)||(16770528-16770605)
[»] chr2 (4 HSPs)
chr2 (32-97)||(572698-572763)
chr2 (16-97)||(14654237-14654318)
chr2 (32-96)||(42403793-42403857)
chr2 (20-120)||(19264899-19264999)
[»] chr4 (3 HSPs)
chr4 (20-96)||(46785039-46785115)
chr4 (32-90)||(3881228-3881286)
chr4 (35-96)||(48846453-48846514)
[»] chr5 (3 HSPs)
chr5 (185-251)||(23944370-23944436)
chr5 (23-97)||(23944524-23944598)
chr5 (16-84)||(7813346-7813414)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 1524556 - 1524299
Alignment:
Q  17 atatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttgg 116  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1524556 atatgccagtatttcttgaagaagatgcattgaaaaccatcagggtcgggtgctttgtaaggttttatggagttaagggcattgaagacttcggttttgg 1524457  T
Q  117 tgataggacatgtgagggagttcttactaggctcatcaatggtggggtgtaggccgaaattgaaggtgcggttttgatggggttgggtgttggccaaaag 216  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1524456 tgataggacatgtgagggaggtcttgctaggctcgtcaatggtggggtgtaggccgaaattgaaggtgcggttttgatagggttgggtgttggccaaaag 1524357  T
Q  217 gttcttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtg 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1524356 gttcttgaaatatttttttgcttccgcttggagaatggaatcatcagaggaccaagtg 1524299  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 43297932 - 43297868
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 96  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  43297932 ttgaagaagatgcaatggaagccatcagggtcgggtgctttgtagggtttcatggagttaagggc 43297868  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 31325512 - 31325591
Alignment:
Q  18 tatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||||| ||||  ||||||||||| || ||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  31325512 tatgccaatattgtttgaagaagatacaatggaaaccatctgagtcaggtgctttgtaaggtttcatggagttaagggca 31325591  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 50451485 - 50451411
Alignment:
Q  16 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagtt 90  Q
    |||||||||||| |  |||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||    
T  50451485 aatatgccagtactgtttgaagaagatgcaatggaaaccatccgggccgggagctttataaggtttcatggagtt 50451411  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 20284435 - 20284358
Alignment:
Q  20 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    |||||||| | ||||||||||||||| ||||||||||| ||  | || |||||||| |||||||||||||||||||||    
T  20284435 tgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggca 20284358  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 5193633 - 5193695
Alignment:
Q  35 aagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||||||||| |||||  |||| ||||||||||||||||| ||||||||||| |||||||||    
T  5193633 aagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggca 5193695  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 23464923 - 23464849
Alignment:
Q  20 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagg 94  Q
    ||||||||||  ||||| || ||||||||||| ||||| ||  | |||||||||||||||||||| |||||||||    
T  23464923 tgccagtattgtttgaaaaaaatgcattggaagccatctggtcctggtgctttgtaaggtttcatagagttaagg 23464849  T

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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 38348028 - 38347796
Alignment:
Q  47 tggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttggtgataggacatgtgagggagttcttactag 146  Q
    |||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||||||||||||  |||| ||||| ||||||||| |||| || |    
T  38348028 tggaaaccatcaaggtccggcgctttgtagggttgcatggagttaagggcagtgaagacttcggttttaatgatgggacaagtgagggagatcttgcttg 38347929  T
Q  147 gctcatcaatggtggggtgtaggccgaaattgaaggtgcggttttgatggggttgggtgttggccaaaaggttcttgaa-atatttttgtgcttccgctt 245  Q
    | |||||||||||||||||||||||| | || |||||||||||||| || ||||| | ||| |||||||||||||||||  | |||||| |||| |||||    
T  38347928 gttcatcaatggtggggtgtaggccgtagttaaaggtgcggttttggtgtggttgagagttagccaaaaggttcttgaatttttttttgagctttcgctt 38347829  T
Q  246 ggagaatggaatcatcagaggaccaagtgccat 278  Q
    |||||||||  |||||||| ||||| |||||||    
T  38347828 ggagaatggtgtcatcagaagaccaggtgccat 38347796  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 23133146 - 23133223
Alignment:
Q  20 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    |||||||| | ||||||||||||||| ||||||||||| ||  | || |||||||| |||||||||||||||||||||    
T  23133146 tgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggca 23133223  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 26433255 - 26433336
Alignment:
Q  16 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    |||||||||||| |  |||||||||||||| ||||||||||||||  | || ||||||||||| ||||||||||||||||||    
T  26433255 aatatgccagtactgtttgaagaagatgcaatggaaaccatcaggaccaggggctttgtaaggcttcatggagttaagggca 26433336  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 38647758 - 38647819
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaag 93  Q
    ||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  38647758 ttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaag 38647819  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 11896723 - 11896657
Alignment:
Q  31 cttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||||||||||||| ||||||||||| ||  | || |||||||| |||||||||||||||||||||    
T  11896723 cttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggca 11896657  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 55025378 - 55025443
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||| || ||||||||||||||||| ||| | || ||||||||||||||||||| ||||||||||    
T  55025378 ttgaaaaatatgcattggaaaccatctgggccaggagctttgtaaggtttcatggtgttaagggca 55025443  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 53608876 - 53608930
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatgg 86  Q
    ||||||||||||||||||||||||||||   |||| ||||| ||||| |||||||    
T  53608876 ttgaagaagatgcattggaaaccatcagcaccgggggctttataaggcttcatgg 53608930  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 12646660 - 12646740
Alignment:
Q  17 atatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    |||||||| |||| ||||||||| |||| |||||| ||||| ||| | |||||||||||||||||||||||||| ||||||    
T  12646660 atatgccaatattgcttgaagaaaatgctttggaagccatccgggccaggtgctttgtaaggtttcatggagtttagggca 12646740  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 35233076 - 35232969
Alignment:
Q  16 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttg 115  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||| ||  | || |||||||| |||||||||||||| ||||||   ||||||||  ||||     
T  35233076 aatatgccaatattgcttgaagaatatgcaatggaaaccatctggtcctggagctttgtagggtttcatggagtttagggcagcaaagacttcattttta 35232977  T
Q  116 gtgatagg 123  Q
    ||||||||    
T  35232976 gtgatagg 35232969  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 16770528 - 16770605
Alignment:
Q  20 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||||||||  ||||| || ||||||||||||||||| ||  | |||||||||||||||||||| ||||||||||||    
T  16770528 tgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggtgctttgtaaggtttcatagagttaagggca 16770605  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 572763 - 572698
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    |||||||||||||| ||||| ||||| ||  ||||||||||||| |||||||||||||||||||||    
T  572763 ttgaagaagatgcaatggaagccatctggcccgggtgctttgtagggtttcatggagttaagggca 572698  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 14654237 - 14654318
Alignment:
Q  16 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||||| |||| | ||||||||||||||| ||||||||||| ||  | || |||||||| || ||||||||||||||||||    
T  14654237 aatatgctagtactgcttgaagaagatgcaatggaaaccatctggaccaggggctttgtagggcttcatggagttaagggca 14654318  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 42403793 - 42403857
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 96  Q
    |||||||||||||| ||||||||||||||  | ||||| |||||||| ||||| ||||| |||||    
T  42403793 ttgaagaagatgcaatggaaaccatcaggaccaggtgccttgtaaggcttcatagagttgagggc 42403857  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 19264999 - 19264899
Alignment:
Q  20 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggcattgaagacttcggttttggtga 119  Q
    ||||||||||  |||||||| ||||| || || ||||||||  | || |||||||| || ||||| ||||| ||||||  ||| ||||||||||| ||||    
T  19264999 tgccagtattgtttgaagaaaatgcaatgaaacccatcaggaccaggggctttgtatggcttcatagagttgagggcagcgaacacttcggttttagtga 19264900  T
Q  120 t 120  Q
    |    
T  19264899 t 19264899  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 46785039 - 46785115
Alignment:
Q  20 tgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 96  Q
    ||||||||||  |||||||||||||||||||||||||| ||  | || | |||||| |||||||||||||| |||||    
T  46785039 tgccagtattgtttgaagaagatgcattggaaaccatccggaccaggagatttgtagggtttcatggagttgagggc 46785115  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 3881286 - 3881228
Alignment:
Q  32 ttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagtt 90  Q
    |||||||||||||| ||||||||||| ||| | || ||||| |||||||||||||||||    
T  3881286 ttgaagaagatgcaatggaaaccatccgggccaggagctttataaggtttcatggagtt 3881228  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 48846514 - 48846453
Alignment:
Q  35 aagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggc 96  Q
    |||||||| ||||| || ||||||||  | || |||||||||||||||||||||| ||||||    
T  48846514 aagaagatacattgaaacccatcaggaccaggggctttgtaaggtttcatggagtgaagggc 48846453  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 23944436 - 23944370
Alignment:
Q  185 cggttttgatggggttgggtgttggccaaaaggttcttgaaatatttttgtgcttccgcttggagaa 251  Q
    ||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||  |||||||||    
T  23944436 cggttatgatgaggttgggtgttggcaaagaggttcttgaaatacttttgagcttcttcttggagaa 23944370  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 23944598 - 23944524
Alignment:
Q  23 cagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcatggagttaagggca 97  Q
    ||||||| |||||||||||| ||||| |||||||| ||| | || |||||| | |||||||||| ||||||||||    
T  23944598 cagtattgcttgaagaagatacattgaaaaccatctgggccaggggctttgaagggtttcatggtgttaagggca 23944524  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7813414 - 7813346
Alignment:
Q  16 aatatgccagtattacttgaagaagatgcattggaaaccatcagggtcgggtgctttgtaaggtttcat 84  Q
    |||||||||||| |  ||||||||||| || |||||||| |||||  | || |||||||||||||||||    
T  7813414 aatatgccagtactgtttgaagaagatacaatggaaaccgtcaggtcctggggctttgtaaggtttcat 7813346  T

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