View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15550_low_2 (Length: 617)
Name: NF15550_low_2
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Complemental strand, 43056480 - 43055899
Alignment:
| Q |
18 |
atacttagaatcaacacgcagtcacaacataatttgtctcatttgaagtttgcttttttctgaagacaccccacaagtaattcttagaatcaaattctgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43056480 |
atacttagaatcaacactgagtcacaacataatttgtctcatttgaagtttgcttttttctgaagacaccccacaagtaattcttagaatcaaattctgt |
43056381 |
T |
|
| Q |
118 |
ccaaaagataactcaagttaaaatgtaatcttaagataagatgtataaataatttgactgaaatattcaacaaaagagatagaatagttgaaactcactc |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43056380 |
ccaaaagataactcaagttaaaatttaatcttaagataagatgtataaatagtttgactgaaatattcaacaaaagagatagaatagttgaaactcactc |
43056281 |
T |
|
| Q |
218 |
tgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttcaacaatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43056280 |
tgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttcaacaatca |
43056181 |
T |
|
| Q |
318 |
ggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttnnnnnnnnnnnnnnnnnnnncaatgacatgatgtaaaac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43056180 |
ggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttaaaaaataaaaatacaaaaacaatgacatgatgtaaaac |
43056081 |
T |
|
| Q |
418 |
atgtatgagaattacccttcatactcgggaaataaataaagagcaatattcttgtcggttggtccatccttcttgaagctatcaggccaaacttctgatc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43056080 |
atgtatgagaattacccttcatactcgggaaataaataaagagcaatattcttgttggttggtccatccttcttgaagctatcaggccaaacttctgatc |
43055981 |
T |
|
| Q |
518 |
tgggtagcaaatctgccgaaagcacatccgggagaagttctgtctccttccaaactttggggcatactaaatcagacaaatg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43055980 |
tgggtagcaaatctgccgaaagcacatccgggagaagttctgtctccttccaaactttggggcatactaaatcagacaaatg |
43055899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 49 - 359
Target Start/End: Complemental strand, 44806277 - 44805973
Alignment:
| Q |
49 |
atttgtctcatttgaagtttgcttttttctgaagacaccccacaagtaattcttagaatcaaattctgtccaaaagataactcaagttaaaatgtaatct |
148 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||||||||||||||||| ||| | | |||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
44806277 |
atttgtctcgtgtgaagtttgcttttttttgaagacaccccacaagtaatacttggtttgaaattctgtccaaaggataactcaaattaaaacgtaatct |
44806178 |
T |
|
| Q |
149 |
taagataagatgtataaataatttgactgaaatattcaacaaaagagatagaatagttgaaactcactctgatgttggattggaagcaaggtggaaggaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||| |||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
44806177 |
------aagatgtataaataatttgactgaaatattcaactgaagagctggaatagatgaagctcactctgatgtcggattggaagcaagtcagaaggaa |
44806084 |
T |
|
| Q |
249 |
atattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttcaacaatcaggttgtctaaggcatccatagatggtctgta |
348 |
Q |
| |
|
| |||||||| ||| |||||||| || ||||||| ||||||||| | | ||||| ||| ||| ||| ||||| ||||| | |||||| ||| || |
|
|
| T |
44806083 |
aaattaaaagcactgcattttcagttacaactcttacggcagcttcagtgcaaatgatatcatcaaccagcttgtcaaaggcctttatagataatctata |
44805984 |
T |
|
| Q |
349 |
gaggaaatatt |
359 |
Q |
| |
|
||||||||||| |
|
|
| T |
44805983 |
gaggaaatatt |
44805973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 550
Target Start/End: Complemental strand, 44805894 - 44805789
Alignment:
| Q |
445 |
ggaaataaataaagagcaatattcttgtcggttggtccatccttcttgaagctatcaggccaaacttctgatctgggtagcaaatctgccgaaagcacat |
544 |
Q |
| |
|
||||| |||||||||||||| | | || |||||||| |||| ||||||||||| |||||| || || |||||||| ||||||||||| |||||||||| |
|
|
| T |
44805894 |
ggaaagaaataaagagcaatgctttcatcagttggtccttcctccttgaagctattaggccacacctcagatctgggaagcaaatctgcggaaagcacat |
44805795 |
T |
|
| Q |
545 |
ccggga |
550 |
Q |
| |
|
||||| |
|
|
| T |
44805794 |
gcggga |
44805789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University