View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15550_low_22 (Length: 252)
Name: NF15550_low_22
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 14331046 - 14331292
Alignment:
| Q |
1 |
ttattggcctgttccaacagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatctt |
100 |
Q |
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| T |
14331046 |
ttattggcctgttccaacaggtactcattatgtggtttgcgtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatctt |
14331145 |
T |
|
| Q |
101 |
attaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14331146 |
attaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacg |
14331245 |
T |
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| Q |
201 |
ttgaactattgtagtttatgttgaactttgttgtgttctgtgctgct |
247 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| |||| |
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| T |
14331246 |
ttgaactattgtaatttatgttgaactttgttgtgttttgtgttgct |
14331292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 21724518 - 21724764
Alignment:
| Q |
1 |
ttattggcctgttccaacagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatctt |
100 |
Q |
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| T |
21724518 |
ttattggcctgttccaacaggtactcattatgtggtttgcgtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatctt |
21724617 |
T |
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| Q |
101 |
attaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacg |
200 |
Q |
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| T |
21724618 |
attaggatctttggctagatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacg |
21724717 |
T |
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| Q |
201 |
ttgaactattgtagtttatgttgaactttgttgtgttctgtgctgct |
247 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| |||| |
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| T |
21724718 |
ttgaactattgtaatttatgttgaactttgttgtgttttgtgttgct |
21724764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 46 - 247
Target Start/End: Original strand, 21804284 - 21804485
Alignment:
| Q |
46 |
tgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct |
145 |
Q |
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| T |
21804284 |
tgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct |
21804383 |
T |
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| Q |
146 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtgctg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |
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| T |
21804384 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttgtgttg |
21804483 |
T |
|
| Q |
246 |
ct |
247 |
Q |
| |
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|| |
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| T |
21804484 |
ct |
21804485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 46 - 247
Target Start/End: Original strand, 9987691 - 9987892
Alignment:
| Q |
46 |
tgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9987691 |
tgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattgggatctttggctagatttacacccttatgtattcaaaacct |
9987790 |
T |
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| Q |
146 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtgctg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9987791 |
gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttttgtgctg |
9987890 |
T |
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| Q |
246 |
ct |
247 |
Q |
| |
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|| |
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| T |
9987891 |
ct |
9987892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 6061798 - 6061728
Alignment:
| Q |
122 |
tacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaaca |
192 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
6061798 |
tacacccttatttattcaaaacctgagtactacaatgctaatttcttgaatggtgttgagatcttttaaca |
6061728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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