View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15550_low_5 (Length: 527)
Name: NF15550_low_5
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 24 - 515
Target Start/End: Complemental strand, 13269073 - 13268582
Alignment:
| Q |
24 |
tctcactatttccattaataacatatctcttttttaaatgtagtcatctttgcctgatgaagctgtgtatgacaaagagaattcacgtgtttcggtattt |
123 |
Q |
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| T |
13269073 |
tctcactatttccattaataacatatctcttttttaaatgtagtcatctttgcctgatgaagctgtgtatgataaagagaattcacgtgtttcggtatgt |
13268974 |
T |
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| Q |
124 |
tgattattttataatttatgataatatatcaatgactacgtacatgtttggaatcacggtgagtttgacaaaatcgtggtgacacatgattttgttgaaa |
223 |
Q |
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| T |
13268973 |
tgattattttataatttatgataatatatcaatgactacgtacatgtttggaatcacggtgagtttgacaaaatcgcggtaacacatgattttgttgaaa |
13268874 |
T |
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| Q |
224 |
cttcaaagtgtgacatattgtgattatgtcaaacttaccgttaatccaaaagatgcaccggatattaatatgtttcatgttagaaaagagacttttggat |
323 |
Q |
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| T |
13268873 |
cttcaaactgggacatattatggttatgccaaacttaccattaatccaaaagatgcaccggatattaatatgtttcatgttagaaaagagacttttggat |
13268774 |
T |
|
| Q |
324 |
ttgattgttatgattgtgaaggtttttgattagatttgaaatatcttattacttttgcagtggccaaagcaattgaattcttcacttgaggaaattgacc |
423 |
Q |
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| T |
13268773 |
ttgattgttatgattgtgaaggtttttgattagatttgaaatatgttattacttttgcagtggccaaagcaattgaattcttcacttgaggaaattgacc |
13268674 |
T |
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| Q |
424 |
ctgaaattgctgatattattgagcttgagaaagctagacaatggaaggtatataagatttttagttttattatcttactgtgttattttctt |
515 |
Q |
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| T |
13268673 |
ctgaaattgctgatattattgagcttgagaaagctagacaatggaaggtatataagatttttagttttattatcttactgtgttattttctt |
13268582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 26533245 - 26533210
Alignment:
| Q |
163 |
gtacatgtttggaatcacggtgagtttgacaaaatc |
198 |
Q |
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| T |
26533245 |
gtacatgtttggaattacggtgagtttgacaaaatc |
26533210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 11271727 - 11271795
Alignment:
| Q |
166 |
catgtttggaatcacggtgagtttgacaaaatcgtggtgacaca-tgattttgttgaaacttcaaagtgt |
234 |
Q |
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| T |
11271727 |
catgtttggaat-acggtgagtttgacaaaatcatggtgtcacagtgattttgataaagctccaaagtgt |
11271795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 7552467 - 7552423
Alignment:
| Q |
163 |
gtacatgtttggaatcacggtgagtttgacaaaatcgtggtgaca |
207 |
Q |
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| T |
7552467 |
gtacatgtttggaatcgcggtgagtttgacaatatcaaggtgaca |
7552423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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