View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15550_low_6 (Length: 454)
Name: NF15550_low_6
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 136 - 437
Target Start/End: Complemental strand, 39810163 - 39809862
Alignment:
| Q |
136 |
ttccagaataagaaaacactaacctccaagatcagcagcaggtgaacgccattcatgttgattaagcgggttggatccatttctggtggggctccgaccg |
235 |
Q |
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| T |
39810163 |
ttccagaataagaaaacactaacctccaagatcagcagcaggtgaacgccattcatgttgattaagcgggttggatccatttctagtggggctccgaccg |
39810064 |
T |
|
| Q |
236 |
tacaagtccannnnnnnnnnnnnnnnnnnnnnnatgttcctgtacagtgtttacaagaaaggaaaatggaacagagtttgcttattggagagtgatctag |
335 |
Q |
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| T |
39810063 |
tacaagtccatttttgttttgtttggggtttttatgttcctgtacagtgtttacaagaaaggaaaatggaacagagtttgcgtattagagagtgatctag |
39809964 |
T |
|
| Q |
336 |
aatgttctggaagatcggcgagcttagctcgtctttcttcctaacttcctcgtcgagagagacagaaagaaaatgggtttttgttttcacacgttccttg |
435 |
Q |
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| T |
39809963 |
aatgttctggaagatcggcgagcttagctcgtctttcttcctaacttcctcgtcgagagagacagaaagaaaatgggtttttgttttcacacgttccttg |
39809864 |
T |
|
| Q |
436 |
tg |
437 |
Q |
| |
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|| |
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| T |
39809863 |
tg |
39809862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 39810266 - 39810190
Alignment:
| Q |
23 |
agtgacaaatgccacatcgactctgcaacataaacaccaccaaaatcaaaaccctaattacaaaattacaaaatccc |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39810266 |
agtgataaatgccacatcgactctgcaacataaacaccaccaaaatcaaaaccctaattacaaaattacaaaatccc |
39810190 |
T |
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