View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15550_low_8 (Length: 406)
Name: NF15550_low_8
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15550_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 53039804 - 53039432
Alignment:
| Q |
19 |
cagagatagtatcggcttgaaattatctgcaactaacttgataacttgtctaatacttccaggctgattacgtgttgggcaagaatcctcagcat--gag |
116 |
Q |
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| T |
53039804 |
cagagatagtattggcttgaaattatctgcaactaacttgataacttgtctaatacttccaggctgattacgtgttgggcaagaatcctcagcatatgag |
53039705 |
T |
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| Q |
117 |
ttttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcatttcctgctaatgcgaaaactggttgcaaggatgggtggcag |
216 |
Q |
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| T |
53039704 |
ttttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcaattcctgctaatgcgaaaactggttgcaaggacgggtggcag |
53039605 |
T |
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| Q |
217 |
tggcttgactcatccgatccgaatcccaacgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaattcta |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039604 |
tggcttgactcatccgatccgaatcccaatgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaattcta |
53039505 |
T |
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| Q |
317 |
tgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039504 |
tgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttc |
53039432 |
T |
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