View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15550_low_9 (Length: 402)

Name: NF15550_low_9
Description: NF15550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15550_low_9
NF15550_low_9
[»] chr4 (4 HSPs)
chr4 (15-230)||(2873609-2873824)
chr4 (249-394)||(2873817-2873961)
chr4 (144-219)||(2901380-2901455)
chr4 (155-219)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (139-214)||(44214023-44214098)
chr2 (155-214)||(44237002-44237061)
chr2 (186-214)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (156-214)||(39334417-39334475)
chr7 (156-214)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (156-220)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 2873609 - 2873824
Alignment:
Q  15 aatatgattatgattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttannnn 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  2873609 aatatgattatgattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttatttt 2873708  T
Q  115 nnnnnnnnnngtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 214  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873709 ttatttttttgtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 2873808  T
Q  215 gagaaagaaactacat 230  Q
    ||||||||||||||||    
T  2873809 gagaaagaaactacat 2873824  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 249 - 394
Target Start/End: Original strand, 2873817 - 2873961
Alignment:
Q  249 aactacgttatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 348  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873817 aactacattatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 2873916  T
Q  349 ggaaagtctgataacagactatatgctgaaggtaaataatactatt 394  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||    
T  2873917 ggaaagtctgataaccgattatatgctgaaggt-aataatactatt 2873961  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 2901455 - 2901380
Alignment:
Q  144 tctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 219  Q
    |||||||| | |||||||||||| ||||||||||| |  ||||||||||||||||||||||  |||||||| ||||    
T  2901455 tctgagttgtctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtctttatgaaggtaagaa 2901380  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 2883510 - 2883574
Alignment:
Q  155 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 219  Q
    |||||||||||| |||||||| || |  |||||||||||| ||||||||| ||||||||||||||    
T  2883510 tagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtcttcatgaaggtgagaa 2883574  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 44214098 - 44214023
Alignment:
Q  139 tgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 214  Q
    ||||||||||| | | ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44214098 tgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44214023  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 44237061 - 44237002
Alignment:
Q  155 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 214  Q
    ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44237061 tagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44237002  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 44226216 - 44226188
Alignment:
Q  186 gacccagatattgatgtctacatgaaggt 214  Q
    |||||||||||||||||||||||||||||    
T  44226216 gacccagatattgatgtctacatgaaggt 44226188  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 39334417 - 39334475
Alignment:
Q  156 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 214  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39334417 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39334475  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 39568187 - 39568129
Alignment:
Q  156 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 214  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39568187 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39568129  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 2164650 - 2164586
Alignment:
Q  156 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaa 220  Q
    |||||||| || ||||||||||| | |||||| || ||| |||||| ||| ||||||||||||||    
T  2164650 agaagagagaaggaagcaaagattaaaccagatcctgatgttgatgcctatatgaaggtgagaaa 2164586  T

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