View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15551_high_18 (Length: 287)

Name: NF15551_high_18
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15551_high_18
NF15551_high_18
[»] chr8 (6 HSPs)
chr8 (152-272)||(40381605-40381725)
chr8 (159-272)||(42164037-42164150)
chr8 (114-272)||(3310505-3310669)
chr8 (152-259)||(12585656-12585763)
chr8 (203-268)||(14539538-14539603)
chr8 (188-259)||(37728441-37728512)
[»] chr5 (4 HSPs)
chr5 (152-272)||(15726880-15727000)
chr5 (152-272)||(15810725-15810845)
chr5 (152-268)||(29368500-29368616)
chr5 (118-267)||(4930571-4930725)
[»] chr2 (6 HSPs)
chr2 (19-90)||(42531153-42531224)
chr2 (167-272)||(28529080-28529185)
chr2 (214-272)||(42530978-42531036)
chr2 (109-162)||(42531042-42531095)
chr2 (189-262)||(44718856-44718929)
chr2 (167-241)||(42071411-42071485)
[»] chr6 (4 HSPs)
chr6 (152-272)||(6822538-6822658)
chr6 (166-253)||(33106820-33106906)
chr6 (199-271)||(18250857-18250929)
chr6 (152-221)||(6901627-6901696)
[»] chr3 (8 HSPs)
chr3 (152-268)||(21984306-21984422)
chr3 (167-258)||(7729824-7729914)
chr3 (109-272)||(1902154-1902324)
chr3 (109-272)||(1911600-1911770)
chr3 (188-272)||(11027235-11027319)
chr3 (120-268)||(54393286-54393444)
chr3 (167-272)||(35864221-35864326)
chr3 (207-271)||(31339953-31340017)
[»] chr1 (5 HSPs)
chr1 (156-265)||(27850458-27850567)
chr1 (152-272)||(30294106-30294226)
chr1 (216-272)||(21487441-21487497)
chr1 (167-268)||(37244922-37245023)
chr1 (109-154)||(46396664-46396709)
[»] chr7 (4 HSPs)
chr7 (152-259)||(22972894-22973001)
chr7 (167-259)||(23756631-23756724)
chr7 (109-154)||(23756745-23756790)
chr7 (193-252)||(33338291-33338348)
[»] chr4 (2 HSPs)
chr4 (169-257)||(47552036-47552126)
chr4 (188-268)||(46732653-46732732)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 40381605 - 40381725
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    |||||| ||||| | |||| |||||||||||| || ||| |||||| ||||||| ||||||| |||||||||||||| |||||||||||| |||||||||    
T  40381605 attgtcttctacgattttttatattatagaaactttgaaagattttctcattttcaatatcaataaaaatatatttctctatataaataactaaacaatc 40381704  T
Q  252 atttaaccgatcatctctcat 272  Q
    |||||||||||||||||||||    
T  40381705 atttaaccgatcatctctcat 40381725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 42164150 - 42164037
Alignment:
Q  159 tctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaac 258  Q
    ||||||| |||| ||||||| ||||||| |||||||||| ||||||||||||||| |||||||||  ||| |||||||||||| ||||||||||||||||    
T  42164150 tctacaattttttatattatggaaattttgaatgattttctcatttttaatatcaataaaaatatccttctctatataaataactaaacaatcatttaac 42164051  T
Q  259 cgatcatctctcat 272  Q
    |||| |||||||||    
T  42164050 cgattatctctcat 42164037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 3310505 - 3310669
Alignment:
Q  114 tttgaatagtgggggcaccatgtatgaaaatttgtagcatt-------gtcctctacaaattttcatattatagaaatttcgaatgattttatcattttt 206  Q
    ||||||| |||||||||| || |||||||||||||||||||       ||||||||| | |||||||||||| |||| || |  | || ||||||||||     
T  3310505 tttgaatggtgggggcactatatatgaaaatttgtagcattaataattgtcctctactatttttcatattatggaaactttggtt-atcttatcattttc 3310603  T
Q  207 aatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctcat 272  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||    
T  3310604 aatatcattaaaaatatatttcactatacaaataattaaacaaacatttaaccggacatctctcat 3310669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 12585656 - 12585763
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    |||||||||||| | || ||||||| | ||||| |||||||||||| ||||||| ||| ||| ||||||| | | || |||||||| ||| || ||||||    
T  12585656 attgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctatataagtaactagacaatc 12585755  T
Q  252 atttaacc 259  Q
    ||||||||    
T  12585756 atttaacc 12585763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 14539603 - 14539538
Alignment:
Q  203 ttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctc 268  Q
    |||| |||| ||||||||||| |||  |||||||||||| |||||||||||||||||| |||||||    
T  14539603 ttttgatattattaaaaatatttttttctatataaataactaaacaatcatttaaccggtcatctc 14539538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 37728512 - 37728441
Alignment:
Q  188 gaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaacc 259  Q
    |||| ||||| | ||||| ||||||| |||||||||  ||| |||||||||||| ||||| |||||||||||    
T  37728512 gaataattttctaattttcaatatcaataaaaatatcattctctatataaataactaaacgatcatttaacc 37728441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 15726880 - 15727000
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    ||||||||||| || |||||||||||| |||| || ||||| |||| | ||||| || |||| ||||||||||||||  ||||||||||| |||||||||    
T  15726880 attgtcctctataatttttcatattatggaaactttgaatggttttcttattttgaaaatcaataaaaatatatttctttatataaataactaaacaatc 15726979  T
Q  252 atttaaccgatcatctctcat 272  Q
    |||||||||||||||||||||    
T  15726980 atttaaccgatcatctctcat 15727000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 15810725 - 15810845
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    |||||||||||||| |||||||||||  |||| || ||| | |||| | ||||| || |||| |||||||||||||| |||||||||||| |||||||||    
T  15810725 attgtcctctacaatttttcatattacggaaactttgaacggttttcttattttgaaaatcaataaaaatatatttctctatataaataactaaacaatc 15810824  T
Q  252 atttaaccgatcatctctcat 272  Q
    |||||||||||||||||||||    
T  15810825 atttaaccgatcatctctcat 15810845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 29368500 - 29368616
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    ||||||||||| || |||||||||||| |||| || ||||| |||| ||||||| ||||||| ||||| ||||||||  ||||||||||||  |||||||    
T  29368500 attgtcctctagaatttttcatattattgaaactttgaatggttttctcattttcaatatcaataaaagtatatttctttatataaataatcgaacaatc 29368599  T
Q  252 atttaaccgatcatctc 268  Q
    |||||||||||||||||    
T  29368600 atttaaccgatcatctc 29368616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 4930571 - 4930725
Alignment:
Q  118 aatagtgggggcaccatgtatgaaaatttgtagcatt----gtcctctacaaattttcatattatagaaatttcgaatgattttatcattttt-aatatc 212  Q
    |||||||| || | ||| ||| |||||||||||||||    ||||||| ||| ||| ||||||||||||| || ||||| |||| |  ||||| ||||||    
T  4930571 aatagtggaggaatcatatataaaaatttgtagcattaattgtcctctgcaattttccatattatagaaactttgaatgttttttttttttttcaatatc 4930670  T
Q  213 attaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatct 267  Q
    | ||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||    
T  4930671 aataaaaatatatttctttatataaataactaaataatcatttaactgatcatct 4930725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 42531224 - 42531153
Alignment:
Q  19 atttttcccatactctttgataggaaaatgaaaaggttgatacctagacaaacttgtagcaataacgagcaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  42531224 atttttcccatactctttgataggaaaatgaaaaggttgatacctagacaaatttgtagcaataatgagcaa 42531153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 28529185 - 28529080
Alignment:
Q  167 ttttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatc 266  Q
    ||||||||||||||||| ||  || |||||||||||||| ||||||| ||||||||| |||| || ||||||||| ||||||||||| ||||||||||||    
T  28529185 ttttcatattatagaaactttaaaagattttatcattttcaatatcaataaaaatatttttctctgtataaataactaaacaatcatgtaaccgatcatc 28529086  T
Q  267 tctcat 272  Q
    ||||||    
T  28529085 tctcat 28529080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 42531036 - 42530978
Alignment:
Q  214 ttaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctcat 272  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42531036 ttaaaaatatatttcactatataaataactaaacaatcatttaaccgatcatctctcat 42530978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 42531095 - 42531042
Alignment:
Q  109 ggatatttgaatagtgggggcaccatgtatgaaaatttgtagcattgtcctcta 162  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  42531095 ggatttttgaatagtgggggcatcatatatgaaaatttgtagcattgtcctcta 42531042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 44718856 - 44718929
Alignment:
Q  189 aatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgat 262  Q
    ||||||||| | ||||| ||||||| || || ||| |||| |||||||||||| ||||||||||||||||||||    
T  44718856 aatgattttcttattttcaatatcagtagaagtatctttctctatataaataactaaacaatcatttaaccgat 44718929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 42071411 - 42071485
Alignment:
Q  167 ttttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataa 241  Q
    |||| ||||||| |||| ||  ||||||||| ||||||| ||||||| |||||||||||||  ||||||||||||    
T  42071411 tttttatattatcgaaactttaaatgattttctcattttcaatatcaataaaaatatatttatctatataaataa 42071485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 6822538 - 6822658
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    |||||||| ||||| |||||||||||| |||| || |||||||||  ||||||| ||||||| ||||||| | ||||  ||||||||||| ||||||||     
T  6822538 attgtcctttacaatttttcatattatggaaactttgaatgatttgttcattttcaatatcaataaaaatttctttctttatataaataactaaacaatt 6822637  T
Q  252 atttaaccgatcatctctcat 272  Q
    |||||||||||||||||||||    
T  6822638 atttaaccgatcatctctcat 6822658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 33106906 - 33106820
Alignment:
Q  166 attttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcat 253  Q
    ||||| |||||||  |||||| |||||||||  ||||||| ||||||| |||||||||||||| |||||||||||| |||||||||||    
T  33106906 atttttatattatgtaaattttgaatgatttc-tcattttcaatatcaataaaaatatatttctctatataaataactaaacaatcat 33106820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 18250929 - 18250857
Alignment:
Q  199 tcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctca 271  Q
    ||||||| ||||| | ||||||||| |||| |||||||||||| |||||||||||||| | | ||||||||||    
T  18250929 tcattttgaatattaataaaaatatttttctctatataaataactaaacaatcatttatctggtcatctctca 18250857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 6901696 - 6901627
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaat 221  Q
    |||||||||||| | || ||||||| | ||||| |||||||||||| ||||||| ||| ||| |||||||    
T  6901696 attgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaat 6901627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 21984422 - 21984306
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    ||||||||||| || |||||||||||| |||| || ||||| |||| ||||||| ||||||| ||||| ||||||||  ||||||||||||  |||||||    
T  21984422 attgtcctctagaatttttcatattattgaaactttgaatggttttctcattttcaatatcaataaaagtatatttctttatataaataatcgaacaatc 21984323  T
Q  252 atttaaccgatcatctc 268  Q
    |||||||||||||||||    
T  21984322 atttaaccgatcatctc 21984306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 7729914 - 7729824
Alignment:
Q  167 ttttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaac 258  Q
    |||| ||||||| ||||||| |||||||||  ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  7729914 tttttatattatggaaattttgaatgatttc-tcattttcaatatcaataaaaatatatttctctatataaataattaaacaatcatttaac 7729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 272
Target Start/End: Complemental strand, 1902324 - 1902154
Alignment:
Q  109 ggatatttgaatagtgggggcaccatgtatgaaaatttgtagca-------ttgtcctctacaaattttcatattatagaaatttcgaatgattttatca 201  Q
    |||| ||||||||||||| ||||||| ||| ||||||| |||||       ||||||| ||  | ||||| |||||| |||| || |||||||||| |||    
T  1902324 ggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctca 1902225  T
Q  202 tttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctcat 272  Q
    |||| ||||||| | ||||||| |||| |||||||||||| |||||||| |||||||| ||||||| ||||    
T  1902224 ttttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcat 1902154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 272
Target Start/End: Complemental strand, 1911770 - 1911600
Alignment:
Q  109 ggatatttgaatagtgggggcaccatgtatgaaaatttgtagca-------ttgtcctctacaaattttcatattatagaaatttcgaatgattttatca 201  Q
    |||| ||||||||||||| ||||||| ||| ||||||| |||||       ||||||| ||  | ||||| |||||| |||| || |||||||||| |||    
T  1911770 ggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctca 1911671  T
Q  202 tttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctcat 272  Q
    |||| ||||||| | ||||||| |||| |||||||||||| |||||||| |||||||| ||||||| ||||    
T  1911670 ttttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaaccaatcatctttcat 1911600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 11027319 - 11027235
Alignment:
Q  188 gaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctcat 272  Q
    |||||||||||||||||| ||||||| ||||||||| || |||||||||||||| |||| ||| |||||| |  |||||||||||    
T  11027319 gaatgattttatcattttcaatatcaataaaaatatcttacactatataaataactaaataattatttaagcagtcatctctcat 11027235  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 54393444 - 54393286
Alignment:
Q  120 tagtgggggcaccatgtatgaaaatttgtagcatt-------gtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatc 212  Q
    |||||||||||| || ||| |||||||||||||||       ||||||||| | | |||||||||| |||| || |||||||||| ||||||| ||||||    
T  54393444 tagtgggggcactatatataaaaatttgtagcattaaaaattgtcctctacgattattcatattatggaaactttgaatgattttctcattttcaatatc 54393345  T
Q  213 attaaaaatata---tttcactatataaataattaaacaatcatttaaccgatcatctc 268  Q
    | |||||| | |   |||  |||||||||||| |||||||| ||||||||| |||||||    
T  54393344 aataaaaaaaaacattttatctatataaataactaaacaattatttaaccggtcatctc 54393286  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 35864326 - 35864221
Alignment:
Q  167 ttttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatc 266  Q
    |||||||||||| |||| ||  ||||||||| | ||||| ||||  |  | || ||| |||| ||||||||| || ||||||||||||||||||||||||    
T  35864326 ttttcatattatggaaactttcaatgatttttttattttcaatacaaggagaagtatctttctctatataaacaactaaacaatcatttaaccgatcatc 35864227  T
Q  267 tctcat 272  Q
    ||||||    
T  35864226 tctcat 35864221  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 31340017 - 31339953
Alignment:
Q  207 aatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctca 271  Q
    ||||||| ||||||||| |||| | |||||| ||| |||||||||||||||| |||||| |||||    
T  31340017 aatatcaataaaaatatctttctcaatataattaactaaacaatcatttaactgatcatttctca 31339953  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 27850458 - 27850567
Alignment:
Q  156 tcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcattt 255  Q
    ||||||| || ||||||| |||| |||| || ||||||| |||||||||| ||||| | ||||||| | ||||||||||||||||| |||||||||||||    
T  27850458 tcctctataatttttcattttatggaaactttgaatgatattatcattttcaatattaataaaaatgtctttcactatataaataactaaacaatcattt 27850557  T
Q  256 aaccgatcat 265  Q
    ||| ||||||    
T  27850558 aactgatcat 27850567  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 30294106 - 30294226
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    |||||| ||||||| |||||||||||| |||| || ||||| |||| | ||||| || |||| ||||||||| |||   ||||||||||| |||||||||    
T  30294106 attgtcttctacaatttttcatattatggaaactttgaatggttttcttattttgaaaatcaataaaaatatctttttttatataaataactaaacaatc 30294205  T
Q  252 atttaaccgatcatctctcat 272  Q
     ||||||||||||||||||||    
T  30294206 ttttaaccgatcatctctcat 30294226  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 21487497 - 21487441
Alignment:
Q  216 aaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctctcat 272  Q
    |||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||    
T  21487497 aaaaatatttttatctatataaataattaaacaatcatttaactgatcatctctcat 21487441  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 37244922 - 37245023
Alignment:
Q  167 ttttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatc 266  Q
    ||||||| ||||  ||| || ||||||||||  ||||||  |||||| |||||||||  ||| | |||||||||||||||||||||||||||  ||||||    
T  37244922 ttttcattttatgaaaactttgaatgattttcacattttcgatatcaataaaaatattgttctcaatataaataattaaacaatcatttaacgaatcatc 37245021  T
Q  267 tc 268  Q
    ||    
T  37245022 tc 37245023  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 46396709 - 46396664
Alignment:
Q  109 ggatatttgaatagtgggggcaccatgtatgaaaatttgtagcatt 154  Q
    |||| |||||||||||||||||| || ||| |||||||||||||||    
T  46396709 ggatttttgaatagtgggggcactatatataaaaatttgtagcatt 46396664  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 22973001 - 22972894
Alignment:
Q  152 attgtcctctacaaattttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatc 251  Q
    |||||||||||| | || ||||||| | ||||| |||||||||||| ||||||| ||| ||| ||||||| | | ||  ||||||| ||| || ||||||    
T  22973001 attgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctatatataagtaactagacaatc 22972902  T
Q  252 atttaacc 259  Q
    ||||||||    
T  22972901 atttaacc 22972894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 23756724 - 23756631
Alignment:
Q  167 ttttcatattatagaaatttcgaatgattttatcatttttaa-tatcattaaaaatatatttcactatataaataattaaacaatcatttaacc 259  Q
    |||| ||||||| |||| || |||||||||| ||||||| || ||||| |||||||||||||  ||||||||| || ||||| |||| ||||||    
T  23756724 tttttatattatggaaactttgaatgattttctcattttcaaatatcaataaaaatatatttttctatataaacaactaaacgatcacttaacc 23756631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 23756790 - 23756745
Alignment:
Q  109 ggatatttgaatagtgggggcaccatgtatgaaaatttgtagcatt 154  Q
    |||||||||||||||||||||||||| ||| |||| ||||||||||    
T  23756790 ggatatttgaatagtgggggcaccatatataaaaagttgtagcatt 23756745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 33338348 - 33338291
Alignment:
Q  193 attttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatca 252  Q
    ||||| ||||||| ||||||| |||||||||  |||  ||||||||||||||||||||||    
T  33338348 attttctcattttcaatatcaataaaaatattattc--tatataaataattaaacaatca 33338291  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 47552126 - 47552036
Alignment:
Q  169 ttcatattatagaaatttcgaatgattttatcatttttaatatcattaaaaatata--tttcactatataaataattaaacaatcatttaa 257  Q
    |||||||||| |||| || |||||||||| ||||||| ||||||| |||||| | |  |||| || ||| ||||| |||||||||||||||    
T  47552126 ttcatattatggaaactttgaatgattttctcattttcaatatcaataaaaagaaacttttctctgtatgaataactaaacaatcatttaa 47552036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 46732653 - 46732732
Alignment:
Q  188 gaatgattttatcatttttaatatcattaaaaatatatttcactatataaataattaaacaatcatttaaccgatcatctc 268  Q
    ||||| |||| ||||||| ||||||| ||||| ||| | |  ||||||||||||||||||||||| ||||||  |||||||    
T  46732653 gaatgtttttctcattttcaatatcaataaaa-tatctctttctatataaataattaaacaatcaattaaccagtcatctc 46732732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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