View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_high_19 (Length: 276)
Name: NF15551_high_19
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42424853 - 42425113
Alignment:
| Q |
1 |
ttatctcacccaaattgacatcaaagaaatcgaacttgaaacgttaaggaggaacacactctcaaatatcataaggagggccaataccaccccactttct |
100 |
Q |
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| T |
42424853 |
ttatctcacccaaattgatatcaagggaatcaaacttaaaacgttaaggaggggcacactctcaaatatcataaggagggccaataccaccccactttct |
42424952 |
T |
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| Q |
101 |
caattgggtcagagggtaacattgttaaaattcctaagtcaatcttattgaagg-ggnnnnnnncattgttaagtcaacacattacctcacacatagaat |
199 |
Q |
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| T |
42424953 |
caattgggtcagagggtaacattgttaacattcctaagtcaatcttattgaaggaaaaaaaaaacattgttaagtcaacacattatctcacacatagaat |
42425052 |
T |
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| Q |
200 |
attggggaacacacattgttaacgttggtgagttgacacat--tatgtcacacatagaata |
258 |
Q |
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| T |
42425053 |
attggggaacacacattgttaacgttggtgagttgacacattatatgtcacacatagaata |
42425113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 11375172 - 11375232
Alignment:
| Q |
5 |
ctcacccaaattgacatcaaaga-aatcgaacttgaaacgttaaggaggaacacactctca |
64 |
Q |
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| T |
11375172 |
ctcatccaaattgacatcggagagaatcgaacttgagacattgaggaggaacacactctca |
11375232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 19154728 - 19154670
Alignment:
| Q |
7 |
cacccaaattgacatcaaaga-aatcgaacttgaaacgttaaggaggaacacactctca |
64 |
Q |
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| T |
19154728 |
cacccaaattgacatcaaagagaatcgaacctgagacctttaggaggagcacactctca |
19154670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 29511043 - 29510982
Alignment:
| Q |
11 |
caaattgacatcaaaga-aatcgaacttgaaacgttaaggaggaacacactctcaaatatca |
71 |
Q |
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||||||||| |||| || |||||||| ||||||||| ||||| ||||| ||||||||||||| |
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| T |
29511043 |
caaattgacgtcaaggagaatcgaacctgaaacgttgaggagaaacacgctctcaaatatca |
29510982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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