View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_high_22 (Length: 248)
Name: NF15551_high_22
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_high_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 35623085 - 35623314
Alignment:
| Q |
19 |
attacatcccatgataaccttggtttattttcttgctcaatattggaacgaaattcaggtacatcaatttgcaccggaccttccattgctattactaaaa |
118 |
Q |
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| T |
35623085 |
attacatcccatgataaccttggtttattttcttgctcaatattggaacgagattcaggtacatcaatttgcaccggaccttccattgctattactaaaa |
35623184 |
T |
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| Q |
119 |
gccaataaaattattcttatagaaagatcaataaaattattaataagaaaatccaaacgactacacagtacagatttttataacattacgttactactaa |
218 |
Q |
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| T |
35623185 |
gccaataaaattattcttatagaaagatcaataaaattattaataagaaaatccaaacgactacacagtacagatttttataacattacgttactactaa |
35623284 |
T |
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| Q |
219 |
aatgtattgaaaagaggcaatgaaatccct |
248 |
Q |
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| T |
35623285 |
aatgtattgaaaagaggcaatgaaatccct |
35623314 |
T |
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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 29678948 - 29678868
Alignment:
| Q |
106 |
gctattactaaaagccaataaaattattcttatagaaag-atcaataaaattattaataagaaaatccaaacgactacaca |
185 |
Q |
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| T |
29678948 |
gctactactaaaagccaataaaattattcttatagaaagaattaatataattattaataagaaaacccaaacgactacaca |
29678868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 14542833 - 14542740
Alignment:
| Q |
18 |
aattacatcccatgataaccttggtttattttcttgctcaatattggaacgaaattcaggtacatcaatttgcaccggaccttccattgctatt |
111 |
Q |
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| T |
14542833 |
aattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccattgctatt |
14542740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 14580754 - 14580852
Alignment:
| Q |
18 |
aattacatcccatgataaccttggtttattttcttgctcaatattggaacgaaattcaggtacatcaatttgcaccggaccttccattgctattactaa |
116 |
Q |
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||||||||||||||| || ||||||| ||||||||||||||||||||| || ||||| |||||| |||||| || | |||||||||||||||| |||| |
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| T |
14580754 |
aattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaagtacattaatttgtactgaaccttccattgctattgctaa |
14580852 |
T |
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