View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15551_high_23 (Length: 236)

Name: NF15551_high_23
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15551_high_23
NF15551_high_23
[»] chr2 (6 HSPs)
chr2 (151-216)||(32766299-32766365)
chr2 (152-216)||(31091587-31091652)
chr2 (152-201)||(14705122-14705172)
chr2 (153-216)||(24459506-24459570)
chr2 (149-216)||(14887558-14887626)
chr2 (145-216)||(39014996-39015068)
[»] chr7 (7 HSPs)
chr7 (151-216)||(7258272-7258338)
chr7 (149-216)||(35727694-35727762)
chr7 (153-216)||(44333138-44333202)
chr7 (156-216)||(48646051-48646112)
chr7 (146-216)||(42477373-42477444)
chr7 (156-216)||(34704911-34704972)
chr7 (152-211)||(48788737-48788797)
[»] chr3 (11 HSPs)
chr3 (153-216)||(48572984-48573048)
chr3 (151-212)||(33428499-33428561)
chr3 (151-216)||(47118111-47118177)
chr3 (151-216)||(52318377-52318443)
chr3 (152-216)||(17700516-17700581)
chr3 (151-216)||(2592067-2592133)
chr3 (147-216)||(19114526-19114596)
chr3 (152-216)||(2591625-2591690)
chr3 (152-216)||(34263803-34263868)
chr3 (152-216)||(36278950-36279015)
chr3 (154-202)||(55389543-55389592)
[»] chr5 (8 HSPs)
chr5 (152-216)||(9538109-9538174)
chr5 (152-216)||(28591174-28591239)
chr5 (16-62)||(18297849-18297894)
chr5 (151-216)||(546096-546161)
chr5 (150-216)||(14891203-14891270)
chr5 (151-216)||(21069286-21069352)
chr5 (149-198)||(24900410-24900460)
chr5 (150-210)||(25590427-25590488)
[»] chr4 (3 HSPs)
chr4 (150-212)||(53771113-53771176)
chr4 (152-216)||(31844720-31844785)
chr4 (153-216)||(47878544-47878608)
[»] chr1 (3 HSPs)
chr1 (150-216)||(7945614-7945681)
chr1 (152-216)||(10332984-10333049)
chr1 (149-216)||(9339641-9339709)
[»] chr6 (1 HSPs)
chr6 (151-216)||(30747996-30748062)
[»] chr8 (4 HSPs)
chr8 (152-216)||(35178864-35178929)
chr8 (151-216)||(32898505-32898571)
chr8 (152-216)||(41753996-41754061)
chr8 (152-216)||(41754855-41754919)


Alignment Details
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 32766365 - 32766299
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggatt 32766299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 31091652 - 31091587
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||||||||| |||||| ||||| | ||||||||||||||| |||||||||||    
T  31091652 gagcaaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggatt 31091587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 14705172 - 14705122
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggt 201  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  14705172 gagcaaatagtcactttggtcccggactctgcacctcgctgtcacataggt 14705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 24459570 - 24459506
Alignment:
Q  153 agcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||| ||||||||||||||| |||||| || |||| ||||||||||||||| || ||||||||    
T  24459570 agcaaagagtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggatt 24459506  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 14887626 - 14887558
Alignment:
Q  149 tttgagcaaatagtcactttggtcccga-ctctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||| |||| |||||||||||||| | |||| ||||||| ||||||  ||||||| |||||||||||    
T  14887626 tttgagtaaatggtcactttggtcccaaactctgcacctcgctgtcacgaaggtccctgactcaggatt 14887558  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 39014996 - 39015068
Alignment:
Q  145 attatttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||| ||||||||||| ||||||| ||||| |||||| ||||||| || ||||||| |||  |||||||||||    
T  39014996 attaattgagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggatt 39015068  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 7258272 - 7258338
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||  ||||||||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggatt 7258338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 35727694 - 35727762
Alignment:
Q  149 tttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||| |||||||||| |||| |||||| ||||||| ||||||||||||||| |||||||||||    
T  35727694 tttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggatt 35727762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 44333138 - 44333202
Alignment:
Q  153 agcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||| ||||    
T  44333138 agcaaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgatt 44333202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 48646051 - 48646112
Alignment:
Q  156 aaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||||| |||| | ||||||| ||||||||||||||| |||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggatt 48646112  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 42477373 - 42477444
Alignment:
Q  146 ttatttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||| ||| ||||||||  |||||| |||||||||||| |||||||| | |||||||||||    
T  42477373 ttatttgagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggatt 42477444  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 34704911 - 34704972
Alignment:
Q  156 aaatagtcactttggtc-ccgactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||| ||| |||||||| ||||||||||||||| ||| | | |||||||||||    
T  34704911 aaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggatt 34704972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 48788797 - 48788737
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactca 211  Q
    |||||||||||||||||| |||  |||| | ||||||| ||||||||||||||| ||||||    
T  48788797 gagcaaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactca 48788737  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 48572984 - 48573048
Alignment:
Q  153 agcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||    
T  48572984 agcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggatt 48573048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 33428561 - 33428499
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcag 212  Q
    ||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||| |||||||    
T  33428561 tgagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcag 33428499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 47118177 - 47118111
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||| |||||||| ||||| |||||| ||||||||||||| ||| |||||||||||||||||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggatt 47118111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 52318443 - 52318377
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||||||| | |||||| ||| ||| |||||||||| |||| |||||||||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggatt 52318377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 17700516 - 17700581
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| |||   |||||| |||||||||||||||||||| || |||||||||||    
T  17700516 gagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggatt 17700581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 2592133 - 2592067
Alignment:
Q  151 tgagcaaatagtcactttggtcccgact-ctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||| ||||| | | || || |||| ||||||||||||||| |||||||||||    
T  2592133 tgagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggatt 2592067  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 19114526 - 19114596
Alignment:
Q  147 tatttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||  ||||||| ||||| |||||| ||| ||||||||||| ||||||| |||||| ||||    
T  19114526 tatttgagcaaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagatt 19114596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 2591625 - 2591690
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| ||||| || ||| || || | ||||||||||||||| |||||||||||    
T  2591625 gagcaaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggatt 2591690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 34263803 - 34263868
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||  || ||||||||    
T  34263803 gagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggatt 34263868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 36278950 - 36279015
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| ||||| || | | || |||||||||||||||||||| || ||||||||    
T  36278950 gagcaaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggatt 36279015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 55389592 - 55389543
Alignment:
Q  154 gcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtc 202  Q
    |||||||||||||||||||||  ||||| ||||||| |||||||||||||    
T  55389592 gcaaatagtcactttggtccctaactctgcacctcgctgtcacataggtc 55389543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 9538174 - 9538109
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||||||||| |||||| || |||||||||| ||||||||| |||||||||||    
T  9538174 gagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggatt 9538109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 28591239 - 28591174
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||| |||| |||||| ||||||| ||||||||||||||| |||||||||||    
T  28591239 gagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggatt 28591174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 18297849 - 18297894
Alignment:
Q  16 caaacctcgatatgcatgcatacctcaatatccctaccaaacactaa 62  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  18297849 caaacctcgatatgc-tgcatacctcaatatccctaccaaacactaa 18297894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 546161 - 546096
Alignment:
Q  151 tgagcaaatagtcactttggtcccgactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||| ||||||| | | || |||| ||||||||||||||| |||||||||||    
T  546161 tgagcaaatagtcactttagtcccgattttgcagctcgctgtcacataggtccctgactcaggatt 546096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 14891270 - 14891203
Alignment:
Q  150 ttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||||||||||||| | |||||| ||||    
T  14891270 ttgagcaaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgatt 14891203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 21069286 - 21069352
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||| ||| | |||||| ||||||||||||||| ||||| | |||||||||||    
T  21069286 tgagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggatt 21069352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 24900460 - 24900410
Alignment:
Q  149 tttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacata 198  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  24900460 tttgagcaaatagtcactttggtccctgactctgcacctcgctgtcacata 24900410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 25590427 - 25590488
Alignment:
Q  150 ttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactc 210  Q
    |||||||||||||||||||| |  | |||||| ||||||| ||||||||||||||| |||||    
T  25590427 ttgagcaaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactc 25590488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 53771176 - 53771113
Alignment:
Q  150 ttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcag 212  Q
    |||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||| |||||||    
T  53771176 ttgagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcag 53771113  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 31844720 - 31844785
Alignment:
Q  152 gagcaaatagtcactttggtcccga-ctctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| ||||| | |||| ||||||| ||||||||||||||| |||||||||||    
T  31844720 gagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggatt 31844785  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 47878608 - 47878544
Alignment:
Q  153 agcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| |||| |||||| ||||||| ||| ||||||||||| ||||| |||||    
T  47878608 agcaaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggatt 47878544  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 7945681 - 7945614
Alignment:
Q  150 ttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||| ||| ||||||||| |||||| ||||||| |||||||||||| || |||||||||||    
T  7945681 ttgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggatt 7945614  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 10332984 - 10333049
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| ||||| |||| | ||||||||||||||||||||||  || ||||||||    
T  10332984 gagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggatt 10333049  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 9339641 - 9339709
Alignment:
Q  149 tttgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||| |||| ||||| || ||| || |||||||| ||||||||||| |||||||||||    
T  9339641 tttgagcaaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggatt 9339709  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 30747996 - 30748062
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||| ||||||    
T  30747996 tgagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggatt 30748062  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 35178929 - 35178864
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||||| || |||||| |||||||||||    
T  35178929 gagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggatt 35178864  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 32898571 - 32898505
Alignment:
Q  151 tgagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||| ||||| |||||| || |||  ||||||||||||||| |||| ||||||    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggatt 32898505  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 41753996 - 41754061
Alignment:
Q  152 gagcaaatagtcactttggtccc-gactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    ||||||||||||||||| ||||| |  ||| ||||| | ||||||||||||||| |||||||||||    
T  41753996 gagcaaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggatt 41754061  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 41754919 - 41754855
Alignment:
Q  152 gagcaaatagtcactttggtcccgactctccacctcgttgtcacataggtccccgactcaggatt 216  Q
    |||||||||||||||||  ||| || ||| ||||||| |||||||||| || | |||||||||||    
T  41754919 gagcaaatagtcactttaatcctgattctgcacctcgctgtcacatagatctctgactcaggatt 41754855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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