View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15551_high_6 (Length: 444)
Name: NF15551_high_6
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 31437790 - 31437616
Alignment:
| Q |
19 |
acccaccacccatctgctgcccttttctagtacttctctgccacacatgatgctcctccaagcataacttggttggtatcctatggttgcctccaagaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31437790 |
acccaccacccatctgctgcccttttctagtacttctctgccacacatgatgctcctccaagcataacttggttggtatcctatggttgcctccaagaag |
31437691 |
T |
|
| Q |
119 |
ttactccgaggatagtacctacttttgaaaatacggctcatcaaggagttagtatcagacataagcctccaactc |
193 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31437690 |
ttactccggggatagtacctgcttttgaaaatacggctcatcaaggagttagcatcagacataagcctccaactc |
31437616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 31192795 - 31192621
Alignment:
| Q |
19 |
acccaccacccatctgctgcccttttctagtacttctctgccacacatgatgctcctccaagcataacttggttggtatcctatggttgcctccaagaag |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
31192795 |
acccaccacccatctggtgcccttttctagtacttctctgccacacatgatgctcctccaagcatagcttggttggtatcctatggttgcctccaagacg |
31192696 |
T |
|
| Q |
119 |
ttactccgaggatagtacctacttttgaaaatacggctcatcaaggagttagtatcagacataagcctccaactc |
193 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31192695 |
ttacaccagggatagtacctacttttgaaaatacggctcatcaaggagttagcatcagacataagcctccaactc |
31192621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 192 - 428
Target Start/End: Original strand, 23458712 - 23458945
Alignment:
| Q |
192 |
tcagtgttctcttcaatgtaagtcttacatttcttttccaaatcaccaaacctttgttctagacaacgaacaagtgccgcagattgaatctgcgctgata |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
23458712 |
tcagcgttctcttcaatgtaagtcttacatttctttttcaaatcaccaaaactttgttctagacaacgaacaagtgccacagattgaatcggcgctgata |
23458811 |
T |
|
| Q |
292 |
gcaaagcatgaaaacacttttctgattcccacttcgcaaatacttcacgatacttttctgtaatgaaatacgtatcaacgaagtttccaaatggaaaatt |
391 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||| | |||||||||||| | || |||||||||| |
|
|
| T |
23458812 |
gcaaaacatggaaa---atttctgattcccacttcgcaaattctttatgatacttttctgtaatgaaatgcttatcaacgaagtcttcatatggaaaatt |
23458908 |
T |
|
| Q |
392 |
gtcatcccggattgatttgccgtcactgttctctgct |
428 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
23458909 |
gtcatccccgattgacttgccgttaccattctctgct |
23458945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 23449169 - 23449080
Alignment:
| Q |
328 |
caaatacttcacgatacttttctgtaatgaaatacgtatcaacgaagtttccaaatggaaaattgtcatcccggattgatttgccgtcac |
417 |
Q |
| |
|
||||| |||||| || |||||||| |||||| | | ||||||| |||| ||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
23449169 |
caaatgcttcacaatccttttctgcaatgaattgcttatcaacaaagtctccaaatggaaaattgtcatcccagattgatgtgccatcac |
23449080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 23462775 - 23462832
Alignment:
| Q |
355 |
tgaaatacgtatcaacgaagtttccaaatggaaaattgtcatcccggattgatttgcc |
412 |
Q |
| |
|
|||||| | ||||||| |||| ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
23462775 |
tgaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagattgatgtgcc |
23462832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University