View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_high_9 (Length: 366)
Name: NF15551_high_9
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 366
Target Start/End: Complemental strand, 38197425 - 38197086
Alignment:
| Q |
25 |
tgttatctaacgtattttgaaagtgtcaagtattcccaagtaagtataactatagttttttatgacattgcaaagaatgtatatacgacaatttcccacg |
124 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38197425 |
tgttatctaatgtattttgaaagtgtcaagtattcccaagtaagtataacta--gtttttgatgacattgcaaagaatgtatatacgacaatttcccaca |
38197328 |
T |
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| Q |
125 |
agataaactgaaaatgtatacttctgcaactgcagtaggaccgtcgtctcctagtaagtactctccttcctcttgttgatcatcaatcacatcatcatct |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38197327 |
agataaactgaaaatgtatacttctgcaactgcagtaggaccgtcatctcctagtaagtactctccttcctcttgttgatcttcaatcacatcatcatct |
38197228 |
T |
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| Q |
225 |
ccttcagatttttcttcattgttgtcatcaccggtttcgttgtaatttccatcctcgctatatttttcttctctagtaaagatatcttctgcctgatgtt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38197227 |
ccttcagatttttcttcattgttgtcatcaccggtttcattgtaatttccatcctcgctatatttttcttctctagtaaagatatcttctgcctgatgtt |
38197128 |
T |
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| Q |
325 |
gaatgaagagcatgaatttgcaggctacgataatgaggaagg |
366 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
38197127 |
gaatgaaaagcatgaatttgcaggctaagataatgaggaagg |
38197086 |
T |
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