View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15551_low_1 (Length: 708)
Name: NF15551_low_1
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 14 - 691
Target Start/End: Complemental strand, 24286148 - 24285476
Alignment:
| Q |
14 |
cacagacaagaattattatctaaaatgttacgccaaagcaatctttggttggtaatctattatgaaatagacgccaagcaaacgttaattctatagagga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24286148 |
cacaaacaagaattattatctaaaatgttatgccaaagcaatctttggttggtaatctattatgaaatagacgccaagcaaacgttaattctatagagga |
24286049 |
T |
|
| Q |
114 |
cggaagcatagaaatcaattccaccgcaaacaaggaaatccaagtagtagtgaattttcctatagcctctaaccaagacgtgttcaaattctaaaaattg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24286048 |
cggaagcatagaaatcaattccaccgcaaacaaggaaatccaagtagtagtgaattttcttatagcctctaaccaagacgtgttcaaattctaaaaattg |
24285949 |
T |
|
| Q |
214 |
gacataaactcagcaaggagaggtagtgtccaagattacccttcattcaagcnnnnnnn-tcaagagccatctccaactctaagaagagttgagaagaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24285948 |
gacataaactcagcaaggagaggtagtgtccaagattacccttcattcaagcaaaaaaaatcaagagccatctccaactctaagaagagttgagaagaac |
24285849 |
T |
|
| Q |
313 |
caaccacaataaccattttcaattctaaaagtataaccgcggtgcgttgaatatagaaaatcaattatggagagatggaaatataagtatgagatgttca |
412 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24285848 |
cat----aataaccattttcaattctaaaagtataaccgcggtgcgttgaatatagaaaatcaattatggagagatggaaatataagtatgagatgttca |
24285753 |
T |
|
| Q |
413 |
aaataattaacataaaacatagataaaatatctgatgaaatagtagtcgatatatcaactacactacaggtctaattatgtttgtaaaccaagtgttcat |
512 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24285752 |
aaataatttaaataaaacatagataaaatatctgatgaaatagtagtcgatatatcaacta---tacaggtctaattatgtttgtaaaccaagtgttcat |
24285656 |
T |
|
| Q |
513 |
agaggaaaataattggtcatttcgctttcttaatggttgttgttaagaattg-------gttgagaccatttgttaaagcagatgttgaggtgatcaatg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| | |||||| |
|
|
| T |
24285655 |
agaggaaaataattggtcatttcgctttcttaatggttgttgttaagaattggttgagagttgagaccatttgtcaaagcagacgttgatg---tcaatg |
24285559 |
T |
|
| Q |
606 |
aagcctgaagaatgctgagaccctgcaacatgtaaacaaataaagcactgtaatattaatgtatggaaatgaaaattaattgcaat |
691 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24285558 |
aagccttcagaatgctgagaccttgcaacatgtaaacaaataaagcattgtaa---taatgtatggaaatgaaaattaattgcaat |
24285476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 645
Target Start/End: Original strand, 24231152 - 24231232
Alignment:
| Q |
562 |
ttggttgagaccatttgttaaagcagatgttgaggtgatcaatgaagcctgaagaatgctgagaccctgcaacatgtaaacaaa |
645 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||| ||| |||||| | ||| |||||||||||||| || |||||| |||| |
|
|
| T |
24231152 |
ttggttgagaccatttgtcaaagcagaagctgagg---tcagtgaagctttaagtatgctgagaccctgtaatatgtaaccaaa |
24231232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 44889443 - 44889528
Alignment:
| Q |
14 |
cacagacaagaattattatctaaaatgttacgccaaagcaat----ctttggttggtaatctattatgaaatagacgccaagcaaa |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44889443 |
cacagacaagaattattatctaaaacgttgcgccaaagcaagttacctttggttggtaatctattatgaaatagacgccaagcaaa |
44889528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 29642444 - 29642485
Alignment:
| Q |
54 |
atctttggttggtaatctattatgaaatagacgccaagcaaa |
95 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29642444 |
atctttggttggtaatctattccgaaatagacgccaagcaaa |
29642485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University