View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_10 (Length: 364)
Name: NF15551_low_10
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 12782428 - 12782092
Alignment:
| Q |
16 |
aagttcatcatgacatctccaaggaaaaagaatgatcataccgtgtttgtgagcttcagaggcccagacacacgtttgaatttcactaatcaactttatg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||| || |
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| T |
12782428 |
aagttcatcatgacatctccaaggaaaaagaatgatcataccgtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttg |
12782329 |
T |
|
| Q |
116 |
gtgcccttcaaagaaaaagaatttttacattcatagatgacattaatcttcaaagaggtaattccatagcatccgacctcattcaagcaattgaaggctc |
215 |
Q |
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| T |
12782328 |
gtgcccttcaaagaaaaagaatttttacattcagagatgacactaatcttcaaaaaggtaattccatagcatccgacctcattcaagcaattgaaggctc |
12782229 |
T |
|
| Q |
216 |
tcaggttttcattgttgtattctctaagaactatgcttattcatcttggtgtttgcgagaattagcatacatccttaactgcagtgtattgtatggaaaa |
315 |
Q |
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| T |
12782228 |
tcaggttttcattgttgtattctctaaaaactatgcttcttcaacttggtgtttgcgagaattagcatacatccttaactgcagtgtattgtatggaaaa |
12782129 |
T |
|
| Q |
316 |
cgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
| |
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||| ||||||||||||||||||||||| ||| ||||| |
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| T |
12782128 |
cgcgttctgcctgttttttatgatgttgatctttctg |
12782092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 57 - 352
Target Start/End: Complemental strand, 12785826 - 12785531
Alignment:
| Q |
57 |
cgtgtttgtgagcttcagaggcccagacacacgtttgaatttcactaatcaactttatggtgcccttcaaagaaaaagaatttttacattcatagatgac |
156 |
Q |
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| T |
12785826 |
cgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcagagatgac |
12785727 |
T |
|
| Q |
157 |
attaatcttcaaagaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaagaactatgcttatt |
256 |
Q |
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| T |
12785726 |
actaaacttaaaaaaggtgaattcatagcacccggactctttagagcaattgaagcctctcagctttacattgttgtattctctaagaactatgcttctt |
12785627 |
T |
|
| Q |
257 |
catcttggtgtttgcgagaattagcatacatccttaactgcagtgtattgtatggaaaacgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
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| T |
12785626 |
caacttggtgtttgcgagaattggaatacatccttcattgcagtaaaaaatatggaaaacacattcttcctattttttatgatgttgatccttctg |
12785531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 197 - 352
Target Start/End: Complemental strand, 12786426 - 12786271
Alignment:
| Q |
197 |
ttcaagcaattgaaggctctcaggttttcattgttgtattctctaagaactatgcttattcatcttggtgtttgcgagaattagcatacatccttaactg |
296 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| || || ||| ||||||||| ||||||||| |||| |
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| T |
12786426 |
ttcacgcaattgaagactctcaggttttcattgttgtattctctaagaactttgctgattcatgtttttgcttggtagaattagcgtacatccttcactg |
12786327 |
T |
|
| Q |
297 |
cagtgtattgtatggaaaacgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
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| T |
12786326 |
cagtgtattgtatggaaaatgcattctgcctattttttatgatgttgatccttctg |
12786271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 57 - 352
Target Start/End: Complemental strand, 12781636 - 12781341
Alignment:
| Q |
57 |
cgtgtttgtgagcttcagaggcccagacacacgtttgaatttcactaatcaactttatggtgcccttcaaagaaaaagaatttttacattcatagatgac |
156 |
Q |
| |
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||||||||||||||| ||||||||||||||||| || |||||||| |||| ||| || |||||| |||||| | | ||| | |||||| ||||||| |
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| T |
12781636 |
cgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcagagatgac |
12781537 |
T |
|
| Q |
157 |
attaatcttcaaagaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaagaactatgcttatt |
256 |
Q |
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| ||| ||| ||| ||| | | ||||||| ||| ||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
12781536 |
actaaacttaaaaaaggcgaattcatagcacccggactctttagagcaattgaagcctctcaggtttacattgttgtattctctaagaactatgcttcct |
12781437 |
T |
|
| Q |
257 |
catcttggtgtttgcgagaattagcatacatccttaactgcagtgtattgtatggaaaacgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
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| T |
12781436 |
caacttggtgtttgcgagaattggaatacatccttcattgcagtaaaaaacatggaaaacacgttcttcctgttttctatgatgttgatccttctg |
12781341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 12786560 - 12786462
Alignment:
| Q |
57 |
cgtgtttgtgagcttcagaggcccagacacacgtttgaatttcactaatcaactttatggtgcccttcaaagaaaaagaatttttacattcatagatga |
155 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| | | ||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
12786560 |
cgtgtttgtgaacttcagaaacgcagacacactctgcactttcacttgtcatctttatggtgcccttcaaagaaaaggaattttgacattcatggatga |
12786462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 352
Target Start/End: Complemental strand, 31030592 - 31030344
Alignment:
| Q |
104 |
atcaactttatggtgcccttcaaagaaaaagaatttttacattcatagatgacattaatcttcaaagaggtaattccatagcatccgacctcattcaagc |
203 |
Q |
| |
|
|||| |||| || |||||||||||||||| | |||||| |||| | ||| |||| ||||||||||| |||| | |||||| || |||| ||||||| || |
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| T |
31030592 |
atcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgc |
31030493 |
T |
|
| Q |
204 |
aattgaaggctctcaggttttcattgttgtattctctaagaactatgcttattcatcttggtgtttgcgagaattagcatacatccttaactgcagtgta |
303 |
Q |
| |
|
||||||||| |||||||||||||||| || |||| || |||||||||| ||| ||||||| ||||||||||| | | |||||||| |||||||| | |
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| T |
31030492 |
aattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttgactgcagtcaa |
31030393 |
T |
|
| Q |
304 |
ttgtatggaaaacgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
| |
|
| | ||||| ||| |||| |||||||||||||||||| ||||||||| |
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| T |
31030392 |
gtttctggaagacgtgttcttcctgttttttatgatgttgatccttctg |
31030344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 104 - 352
Target Start/End: Original strand, 31488841 - 31489089
Alignment:
| Q |
104 |
atcaactttatggtgcccttcaaagaaaaagaatttttacattcatagatgacattaatcttcaaagaggtaattccatagcatccgacctcattcaagc |
203 |
Q |
| |
|
|||| |||| || |||||||||||||||| | |||||| | || | |||||||| ||| ||||||| |||| | || |||||| |||| ||||||| || |
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| T |
31488841 |
atcatctttttgctgcccttcaaagaaaaggcatttttgcgtttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgc |
31488940 |
T |
|
| Q |
204 |
aattgaaggctctcaggttttcattgttgtattctctaagaactatgcttattcatcttggtgtttgcgagaattagcatacatccttaactgcagtgta |
303 |
Q |
| |
|
||||||||| |||||||||||||||| || |||| || |||||||||| ||| ||||||| ||||||||||| | |||||||||| ||| |||| | |
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| T |
31488941 |
aattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggaatacatccttcactacagtcaa |
31489040 |
T |
|
| Q |
304 |
ttgtatggaaaacgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
| |
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| | ||||| ||| |||| |||||||||||||||||| ||||||||| |
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| T |
31489041 |
gtttttggaagacgtgttcttcctgttttttatgatgttgatccttctg |
31489089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 104 - 352
Target Start/End: Complemental strand, 31020711 - 31020463
Alignment:
| Q |
104 |
atcaactttatggtgcccttcaaagaaaaagaatttttacattcatagatgacattaatcttcaaagaggtaattccatagcatccgacctcattcaagc |
203 |
Q |
| |
|
|||| |||| || |||||||||||||||| | |||||| |||| | ||| ||| ||||||||||| |||| | |||||| || |||| ||||||| || |
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| T |
31020711 |
atcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgc |
31020612 |
T |
|
| Q |
204 |
aattgaaggctctcaggttttcattgttgtattctctaagaactatgcttattcatcttggtgtttgcgagaattagcatacatccttaactgcagtgta |
303 |
Q |
| |
|
||||||||| |||||||||||||||| || |||| || |||||| ||| ||| ||||||| ||||||||||| | | |||||||| |||||||| | |
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| T |
31020611 |
aattgaagggtctcaggttttcattgcggtcctctccaaaaactattcttcctcaacttggtgcttgcgagaattggtacacatccttgactgcagtcaa |
31020512 |
T |
|
| Q |
304 |
ttgtatggaaaacgcattctgcctgttttttatgatgttaatccttctg |
352 |
Q |
| |
|
| | ||||| ||| |||| |||||||||||||||||| ||||||||| |
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| T |
31020511 |
gtttctggaagacgtgttcttcctgttttttatgatgttgatccttctg |
31020463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 290
Target Start/End: Original strand, 31476303 - 31476442
Alignment:
| Q |
151 |
gatgacattaatcttcaaagaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaagaactatg |
250 |
Q |
| |
|
||||||| ||||||||||| |||| | ||||||||| | || ||| |||| ||||||||||| |||||||||||| |||| || || || |||||||| | |
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| T |
31476303 |
gatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgtcaaagaactacg |
31476402 |
T |
|
| Q |
251 |
cttattcatcttggtgtttgcgagaattagcatacatcct |
290 |
Q |
| |
|
||| ||| ||||||| ||| |||||| | ||||||||| |
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|
| T |
31476403 |
ctttctcaacttggtgcttgaaagaattggaatacatcct |
31476442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 31151141 - 31151041
Alignment:
| Q |
178 |
tccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaagaactatgcttattcatcttggtgtttgcgagaat |
277 |
Q |
| |
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||||||||| | || ||| ||| ||||||||||| ||||||| |||| |||| || ||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
31151141 |
tccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaat |
31151042 |
T |
|
| Q |
278 |
t |
278 |
Q |
| |
|
| |
|
|
| T |
31151041 |
t |
31151041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 31162375 - 31162296
Alignment:
| Q |
221 |
ttttcattgttgtattctctaagaactatgcttattca--tcttggtgtttgcgagaattagcatacatccttaactgca |
298 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||| | |||||| |||| |||||||| || ||||||| |||||| |
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|
| T |
31162375 |
ttttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgca |
31162296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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