View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15551_low_11 (Length: 362)

Name: NF15551_low_11
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15551_low_11
NF15551_low_11
[»] chr5 (15 HSPs)
chr5 (135-339)||(30005394-30005598)
chr5 (135-348)||(30071386-30071597)
chr5 (137-320)||(30045558-30045740)
chr5 (16-105)||(30005628-30005717)
chr5 (147-325)||(29990268-29990444)
chr5 (16-105)||(29990486-29990575)
chr5 (16-105)||(30071267-30071356)
chr5 (16-105)||(29949323-29949412)
chr5 (19-105)||(29999190-29999276)
chr5 (16-105)||(29962881-29962970)
chr5 (16-105)||(30011828-30011917)
chr5 (20-105)||(29943655-29943740)
chr5 (16-105)||(30045437-30045526)
chr5 (135-250)||(29999048-29999160)
chr5 (166-251)||(29943509-29943594)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 135 - 339
Target Start/End: Complemental strand, 30005598 - 30005394
Alignment:
Q  135 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30005598 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatgctt 30005499  T
Q  235 tggtttggctgaagtacgtaacaaggttgaagactatatagaactccaagttaatctcatattatcttgaaaccgatggtgtacgtgtttggtttgtata 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  30005498 tggtttggctgaagtacgtaacaaggttgaagactatatagaactccaagttaatctcagattatcttgaaaccggtggtgtacgtgtttggtttgtata 30005399  T
Q  335 tctag 339  Q
    |||||    
T  30005398 tctag 30005394  T

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Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 135 - 348
Target Start/End: Original strand, 30071386 - 30071597
Alignment:
Q  135 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30071386 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 30071485  T
Q  235 tggtttggctgaagtacgtaacaaggttgaagactatatagaactccaagttaatctcatattatcttgaaaccgatggtgtacgtgtttggtttgtata 334  Q
    ||||||||||||||||||||||||||||||||||  |||| |||| |||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  30071486 tggtttggctgaagtacgtaacaaggttgaagac--tatacaactacaagttgatctcttattatcttgaagccggtggtgtacgtgtttggtttgtata 30071583  T
Q  335 tctagtgagatatt 348  Q
    ||||||||||||||    
T  30071584 tctagtgagatatt 30071597  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 137 - 320
Target Start/End: Original strand, 30045558 - 30045740
Alignment:
Q  137 atgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctac-aatgaatggttt 235  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||     
T  30045558 atgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaatattattgttgttactgcaaaagacatgtctacaaatgaatggttg 30045657  T
Q  236 ggtttggctgaagtacgtaacaaggttg------aagactatatagaactccaagttaatctcatattatcttgaaaccgatggtgtacgt 320  Q
    ||||        |||||||| |||||||      ||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||    
T  30045658 ggtt--------gtacgtaataaggttgaagataaagactatatagaactccaagttgatctcatattatcttgaaactggtggtatacgt 30045740  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 30005717 - 30005628
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30005717 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgttgatggacctggtg 30005628  T

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Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 147 - 325
Target Start/End: Complemental strand, 29990444 - 29990268
Alignment:
Q  147 agtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtttggctga 246  Q
    |||||||||||||||||  |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||           
T  29990444 agtttgaatagaaagtatgtgaaagtgaagagaaggaaagcaaatattgttgttgttactgcaaaagacatgtctacaatgaatggtttggtt------- 29990352  T
Q  247 agtacgtaaca------aggttgaagactatatagaactccaagttaatctcatattatcttgaaaccgatggtgtacgtgtttg 325  Q
     ||||||||||      | ||||||||||||||||||||||||||| ||||| ||||||||||||||   || ||||||||||||    
T  29990351 -gtacgtaacaatgttgaagttgaagactatatagaactccaagttgatctcttattatcttgaaactcgtgatgtacgtgtttg 29990268  T

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Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 29990575 - 29990486
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  29990575 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttcctattattggtagtgttggtggacatggtg 29990486  T

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Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 30071267 - 30071356
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||    
T  30071267 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtg 30071356  T

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Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 29949412 - 29949323
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||| |||||||||||    
T  29949412 attttttggagagtgattgaagtgttctatgtggaagtttacctaataggtgaaggtttccaattattggtagtgttggtggacctggtg 29949323  T

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Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 29999276 - 29999190
Alignment:
Q  19 ttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  29999276 ttttggagagtgattgaagtgttctatgtggaagtttacctaacatgtgaaggtttcctattattggtagtgttggtggacctggtg 29999190  T

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Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 29962970 - 29962881
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  29962970 attttttggacagtgattgaagtgttctatgtggaagtttacctaacatgtgaaggtttcctattattggtagtgttggtggacctggtg 29962881  T

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Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 30011828 - 30011917
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  30011828 attttttggacagtgattgaagtgttctatgtggaagtttacctaacatgtgaaggtttcctattattggtagtgttggtggacctggtg 30011917  T

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Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 29943740 - 29943655
Alignment:
Q  20 tttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| || ||||||||||||||||||| || |||||||||||    
T  29943740 tttggagagtgattgaagtgttctatgtggaagggtgcctaatatgtggaggtttccgattattggtagtgatggtggacctggtg 29943655  T

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Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 30045437 - 30045526
Alignment:
Q  16 attttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccgattattggtagtgttgatggacctggtg 105  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||||||||| || || |||||||||||||||| |||||||||||    
T  30045437 attttttggagagtgactgaagtgttctatgtggaagggtgcctaatatgtgaaggttccctattattggtagtgttggtggacctggtg 30045526  T

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Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 29999160 - 29999048
Alignment:
Q  135 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 234  Q
    ||||||||| |||||||||||| || ||| ||||||||||||||||| |||   | ||| ||||||| |   |||||||||||| | |||||||||| ||    
T  29999160 ggatgtaagaagagtttgaataaaaggtatatgaaagtgaagagaaggaaatagagcatagttgttgct---gcaaaagacatgaccacaatgaatgatt 29999064  T
Q  235 tggtttggctgaagta 250  Q
    ||||||||||||||||    
T  29999063 tggtttggctgaagta 29999048  T

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Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 29943594 - 29943509
Alignment:
Q  166 tgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtttggctgaagtac 251  Q
    |||||||||||| ||| |||||||  | ||||||| ||  |||| ||||||| |||||||||||||||||||||||| | ||||||    
T  29943594 tgaaagtgaagataaggaaagcaagtactgttgttattgctgcagaagacatctctacaatgaatggtttggtttggatcaagtac 29943509  T

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