View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_13 (Length: 356)
Name: NF15551_low_13
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 13267945 - 13268274
Alignment:
| Q |
12 |
aagaacacacaacaagtaataaactgacatactcatttcctccgtaatatcttgctccgggataaccttcactgtatttgtttgtcatgatagagccaac |
111 |
Q |
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| T |
13267945 |
aagaacacacaacaagttataaactgacatactcatttcctccgtaatatcttgctccgggataaccttcactgtatttgtttgtcatgatagagccaac |
13268044 |
T |
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| Q |
112 |
agcttgcataacagataaagaagtgaagttttctgatggaatcagttccagccccttcaccaaaataataaaacaaccaagttctctttaagatagaatg |
211 |
Q |
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| T |
13268045 |
agcttgcataacagataaagaagtgaagttttctgatggaatcagttccagccccttcaccaaaataataaaacaaccaagttctctttaagatagaatg |
13268144 |
T |
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| Q |
212 |
caaaatttaaaaataaaatccttaagatgagaaatttagtatactacatcatgcttcttcacaacacaactatatcaaatattttaacacacaatcaaac |
311 |
Q |
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| T |
13268145 |
caaaattttaaaa-aaaatccttaagatgagaaatttagtatagtacatcatgcttcttcacaacacaactataccaaatattttaacacacaatcaaac |
13268243 |
T |
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| Q |
312 |
agttggagaattcttttgtagctcaatattg |
342 |
Q |
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| T |
13268244 |
agttggagaattcttttgtagctcaatattg |
13268274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 28321793 - 28321664
Alignment:
| Q |
38 |
acatactcatttcctccgtaatatcttgctccgggataaccttcactgtatttgtttgtcatgatagagccaacagcttgcataacagataaagaagtga |
137 |
Q |
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| T |
28321793 |
acatactcatttccaccatagtatctagcaccaggataaccttcactgtatttattcgtcataaccgatccaaccgcttgcatcaccgacaacgacgtaa |
28321694 |
T |
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| Q |
138 |
agttttctgatggaatcagttccagcccct |
167 |
Q |
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| T |
28321693 |
aattttctgatggtataagctctagcccct |
28321664 |
T |
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