View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_14 (Length: 335)
Name: NF15551_low_14
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 33161979 - 33161669
Alignment:
| Q |
19 |
gtggcggtggttgtgaaatttggtgtacacgtggaggaatggtaagttgaggaaagaaagagtgttatgaggtttgtgaataaaaggagggaaatgaaga |
118 |
Q |
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| T |
33161979 |
gtggcggtggttgtgaaatttggtgtacacgtggaggaatggtaagttgaggaaagaaagagtgttatgaggtttgtgaataaaaggagggaaatgaaga |
33161880 |
T |
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| Q |
119 |
gtaaattggtggttagggtttttggattagggttaatattagaacccatgttac-aaaataggaatgtgtttattggtttgttatagattgattttgagt |
217 |
Q |
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| T |
33161879 |
gtaaattggtggttagggtttttggattagggttaatattagaacccatgttacaaaaataggaatgtgtttattggtttgttatagattgattttgagt |
33161780 |
T |
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| Q |
218 |
ttgattatggttactaagcttcgaaggtagccatttttatgtgaagattttaagcattttcttattaagttattgtcaagtgttaaggattcctttggta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161779 |
ttgattatggttactaagcttcgaaggtagccatttttatgtgaagattttaagcattttcttattaagttattgtcaagtgttaaggattcctttggta |
33161680 |
T |
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| Q |
318 |
tagtattatat |
328 |
Q |
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||||||||||| |
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| T |
33161679 |
tagtattatat |
33161669 |
T |
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