View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15551_low_15 (Length: 334)

Name: NF15551_low_15
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15551_low_15
NF15551_low_15
[»] chr5 (8 HSPs)
chr5 (9-297)||(35623323-35623612)
chr5 (70-118)||(43405696-43405744)
chr5 (70-118)||(4348011-4348059)
chr5 (68-118)||(27721194-27721244)
chr5 (70-102)||(4592460-4592492)
chr5 (70-118)||(14733617-14733665)
chr5 (70-98)||(19179548-19179576)
chr5 (74-118)||(43222189-43222233)
[»] chr4 (12 HSPs)
chr4 (70-123)||(26332939-26332992)
chr4 (66-116)||(3326582-3326632)
chr4 (60-98)||(9608043-9608081)
chr4 (80-118)||(25442150-25442188)
chr4 (66-100)||(28701702-28701736)
chr4 (70-98)||(4404375-4404403)
chr4 (70-98)||(10565118-10565146)
chr4 (70-110)||(17080883-17080923)
chr4 (66-118)||(31785502-31785554)
chr4 (70-98)||(48084489-48084517)
chr4 (70-98)||(54997572-54997600)
chr4 (70-98)||(56564873-56564901)
[»] chr2 (8 HSPs)
chr2 (66-118)||(12949559-12949611)
chr2 (70-130)||(2522541-2522601)
chr2 (68-118)||(45446566-45446616)
chr2 (68-116)||(2358355-2358403)
chr2 (70-100)||(373128-373158)
chr2 (70-118)||(28853112-28853160)
chr2 (70-98)||(35315585-35315613)
chr2 (70-98)||(36758825-36758853)
[»] chr1 (8 HSPs)
chr1 (66-116)||(24339324-24339374)
chr1 (68-117)||(44483830-44483879)
chr1 (70-114)||(39426044-39426088)
chr1 (79-118)||(10778062-10778101)
chr1 (67-118)||(46608340-46608391)
chr1 (70-118)||(680000-680048)
chr1 (70-98)||(10776181-10776209)
chr1 (70-98)||(27982135-27982163)
[»] chr7 (12 HSPs)
chr7 (66-118)||(11828863-11828915)
chr7 (70-118)||(47270970-47271018)
chr7 (70-118)||(40143567-40143615)
chr7 (66-118)||(46823364-46823416)
chr7 (70-118)||(47456595-47456643)
chr7 (67-118)||(25656911-25656962)
chr7 (70-100)||(27386902-27386932)
chr7 (70-98)||(7712331-7712359)
chr7 (70-98)||(18803302-18803330)
chr7 (70-98)||(27117446-27117474)
chr7 (74-118)||(40721057-40721101)
chr7 (70-98)||(44390861-44390889)
[»] chr8 (5 HSPs)
chr8 (68-109)||(11452958-11452999)
chr8 (66-114)||(10869577-10869625)
chr8 (60-118)||(44517617-44517675)
chr8 (70-98)||(11759266-11759294)
chr8 (70-98)||(20169151-20169179)
[»] scaffold0252 (1 HSPs)
scaffold0252 (70-116)||(10438-10484)
[»] scaffold0007 (1 HSPs)
scaffold0007 (66-99)||(246312-246345)
[»] scaffold0121 (1 HSPs)
scaffold0121 (70-98)||(29533-29561)
[»] chr3 (4 HSPs)
chr3 (70-98)||(3009304-3009332)
chr3 (66-110)||(41726924-41726968)
chr3 (70-98)||(51982549-51982577)
chr3 (70-118)||(52255652-52255699)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 35623612 - 35623323
Alignment:
Q  9 gagaagaaagtcttggaatgataatgagagggggtgaagggagtgccgctgaacgattaaggatcctctccatttataaaaataaatggagaatatcatt 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35623612 gagaagaaagtcttgggatgataatgagagggggtgaagggagtgcggctgaacgattaaggatcctctccatttataaaaataaatggagaatgtcatt 35623513  T
Q  109 tagaaagagagatactcacaaatgaaaaatatcataaatggagatgatcttaactctcgttgaacaccgttaagagaaatagg-nnnnnnnnnactttct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||          |||||||    
T  35623512 tagaaagagagatactcacaaatgaaaaatatcataaatggagatgatcttaactctcgttgaacagtgttaagagaagtaggttttttttttactttct 35623413  T
Q  208 tcatttagttgtctgcctttatttcatgtattttatttctctataaaaatgtctttctttttagctgtactctatagtcatcttgttgcc 297  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35623412 tcatttagttgtctgcctttatttcatgtattttattttactacaaaaatgtctttctttttagctgtactctatagtcatcttgttgcc 35623323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 43405744 - 43405696
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  43405744 gatcctctccatcaataaaaataaatggagaatatcatttagaaagaga 43405696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 4348011 - 4348059
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  4348011 gatcctctccatatataaaaataaatggagaatgccatttagaaagaga 4348059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 27721244 - 27721194
Alignment:
Q  68 aggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||||| |||||||||||||||  |||  |||||||||||||    
T  27721244 aggatcctctccattaataaaaataaatggaagatacaatttagaaagaga 27721194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 4592460 - 4592492
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaat 102  Q
    |||||||| ||||||||||||||||||||||||    
T  4592460 gatcctcttcatttataaaaataaatggagaat 4592492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 14733665 - 14733617
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||||||||||||||||| ||| | |||||  ||||||||    
T  14733665 gatcctctccatttataaaaataaatgaagattgtcattaggaaagaga 14733617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 19179576 - 19179548
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  19179576 gatcctctccatttataaaaataaatgga 19179548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 43222233 - 43222189
Alignment:
Q  74 ctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||||||||||||||||| | |||||  ||||||||    
T  43222233 ctctccatttataaaaataaatggagattgtcattatgaaagaga 43222189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 26332939 - 26332992
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagagagatac 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26332939 gatcctctccatttataaaaataaatggagaatgtcatttagaaagagatatac 26332992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 3326632 - 3326582
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaaga 116  Q
    |||||||||||||||||||| |||||||| | || ||| ||||||||||||    
T  3326632 taaggatcctctccatttatgaaaataaacgaaggataccatttagaaaga 3326582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 9608081 - 9608043
Alignment:
Q  60 aacgattaaggatcctctccatttataaaaataaatgga 98  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  9608081 aacggttaaagatcctctccatttataaaaataaatgga 9608043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 25442150 - 25442188
Alignment:
Q  80 atttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||||||||||| || |||||||||||||||    
T  25442150 atttataaaaataaatggagtatgtcatttagaaagaga 25442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 28701702 - 28701736
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggaga 100  Q
    ||||||||||||||||||||||||| |||||||||    
T  28701702 taaggatcctctccatttataaaaacaaatggaga 28701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 4404403 - 4404375
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  4404403 gatcctctccatttataaaaataaatgga 4404375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 10565118 - 10565146
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  10565118 gatcctctccatttataaaaataaatgga 10565146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 17080923 - 17080883
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcattta 110  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  17080923 gatcatcttcatttataaaaataaatggagaatgtcattta 17080883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 31785502 - 31785554
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||| ||| ||| ||||||||||||||||||||||||  |||||| |||||||    
T  31785502 taagaatcatcttcatttataaaaataaatggagaatggcatttaaaaagaga 31785554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 48084489 - 48084517
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  48084489 gatcctctccatttataaaaataaatgga 48084517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 54997572 - 54997600
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  54997572 gatcctctccatttataaaaataaatgga 54997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 56564901 - 56564873
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  56564901 gatcctctccatttataaaaataaatgga 56564873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 12949611 - 12949559
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  12949611 taaggatcctctccatttataaaaataaatggaggataccatttagaaagaga 12949559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 2522601 - 2522541
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagagagatactcacaaa 130  Q
    |||||||| ||||||||||||||||||||| ||  ||||||||||||||||||| ||||||    
T  2522601 gatcctcttcatttataaaaataaatggagcatgccatttagaaagagagatacacacaaa 2522541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 45446566 - 45446616
Alignment:
Q  68 aggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  45446566 aggatcctctccatttataaaaataaatggagattgccatttagaaagaga 45446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 2358355 - 2358403
Alignment:
Q  68 aggatcctctccatttataaaaataaatggagaatatcatttagaaaga 116  Q
    ||||| ||||| ||||||||||||||||||| ||| |||||||||||||    
T  2358355 aggatactctctatttataaaaataaatggaaaatctcatttagaaaga 2358403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 373128 - 373158
Alignment:
Q  70 gatcctctccatttataaaaataaatggaga 100  Q
    |||||||||||||||||||||||||||||||    
T  373128 gatcctctccatttataaaaataaatggaga 373158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 28853160 - 28853112
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||||||| ||||||||||||| |||  |||| ||||||||    
T  28853160 gatcctctccatttatcaaaataaatggaggatacaatttggaaagaga 28853112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 35315613 - 35315585
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  35315613 gatcctctccatttataaaaataaatgga 35315585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 36758825 - 36758853
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  36758825 gatcctctccatttataaaaataaatgga 36758853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 24339324 - 24339374
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaaga 116  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24339324 taaggatcctctccatttataaaaataaatggagaatgttatttagaaaga 24339374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 44483879 - 44483830
Alignment:
Q  68 aggatcctctccatttataaaaataaatggagaatatcatttagaaagag 117  Q
    |||||||||||||||||||||||| ||||||| ||  |||||||||||||    
T  44483879 aggatcctctccatttataaaaattaatggaggatgccatttagaaagag 44483830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 39426088 - 39426044
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaa 114  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||    
T  39426088 gatcttctccatttataaaaataaatagagaatgtcatttagaaa 39426044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 10778101 - 10778062
Alignment:
Q  79 catttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  10778101 catttataaaaacaaatggagattatcatttagaaagaga 10778062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 46608340 - 46608391
Alignment:
Q  67 aaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||||||||| |||||||| |||| ||  ||||||||||||||    
T  46608340 aaggatcctctccatttatgaaaataaagggaggatgccatttagaaagaga 46608391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 680000 - 680048
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||| ||| ||||||||||||||||| || ||| |||||||||||||||    
T  680000 gatcttcttcatttataaaaataaatagaaaatgtcatttagaaagaga 680048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 10776209 - 10776181
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  10776209 gatcctctccatttataaaaataaatgga 10776181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 27982163 - 27982135
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  27982163 gatcctctccatttataaaaataaatgga 27982135  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 11828863 - 11828915
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  11828863 taaggatcctctccgtttataaaaataaatggagaatgccatttagaaagaga 11828915  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 47270970 - 47271018
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  47270970 gatcctctccatttataaaaataaatgaagaatgtcatttagatagaga 47271018  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 40143615 - 40143567
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||||||||||||||||||||  |||| |||| ||||||||    
T  40143615 gatcctctccatttataaaaataaatggaagatataatttggaaagaga 40143567  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 46823364 - 46823416
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||| ||||||||||||||||| |||| |  ||||||||||||||    
T  46823364 taaggatcctctacatttataaaaataaatagagattgacatttagaaagaga 46823416  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 47456595 - 47456643
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||| |||||||||| ||||||||||||||||| ||||||| |||||||    
T  47456595 gatcatctccatttacaaaaataaatggagaatgtcatttaaaaagaga 47456643  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 25656962 - 25656911
Alignment:
Q  67 aaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||||| |||||||||||||||||||||||||| | || |||| |||||||    
T  25656962 aaggatcttctccatttataaaaataaatggagattctcttttataaagaga 25656911  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 27386902 - 27386932
Alignment:
Q  70 gatcctctccatttataaaaataaatggaga 100  Q
    |||||||||||||||||||||||||||||||    
T  27386902 gatcctctccatttataaaaataaatggaga 27386932  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 7712331 - 7712359
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  7712331 gatcctctccatttataaaaataaatgga 7712359  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 18803330 - 18803302
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  18803330 gatcctctccatttataaaaataaatgga 18803302  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 27117446 - 27117474
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  27117446 gatcctctccatttataaaaataaatgga 27117474  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 40721101 - 40721057
Alignment:
Q  74 ctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||||    
T  40721101 ctctctatttataaaattaagtggaggatatcatttagaaagaga 40721057  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 44390889 - 44390861
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  44390889 gatcctctccatttataaaaataaatgga 44390861  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 11452958 - 11452999
Alignment:
Q  68 aggatcctctccatttataaaaataaatggagaatatcattt 109  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  11452958 aggatcctctccatttataaaaataaatggagattaccattt 11452999  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 10869625 - 10869577
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcatttagaaa 114  Q
    |||||||||||||| ||||||||| ||||| |||||| |||||||||||    
T  10869625 taaggatcctctccgtttataaaattaaattgagaatgtcatttagaaa 10869577  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 44517617 - 44517675
Alignment:
Q  60 aacgattaaggatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    ||||| ||||||||  |||||||||| ||||||||||||| |||| |||| ||||||||    
T  44517617 aacgagtaaggatctcctccatttatcaaaataaatggagtatataatttggaaagaga 44517675  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 11759294 - 11759266
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  11759294 gatcctctccatttataaaaataaatgga 11759266  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 20169179 - 20169151
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  20169179 gatcctctccatttataaaaataaatgga 20169151  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 10438 - 10484
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaaga 116  Q
    |||||||||||||||| |||||||||||||||||  ||||| |||||    
T  10438 gatcctctccatttatcaaaataaatggagaatacaatttaaaaaga 10484  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 246345 - 246312
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggag 99  Q
    |||||||||||||||||||| |||||||||||||    
T  246345 taaggatcctctccatttatcaaaataaatggag 246312  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 29533 - 29561
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  29533 gatcctctccatttataaaaataaatgga 29561  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 3009332 - 3009304
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  3009332 gatcctctccatttataaaaataaatgga 3009304  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 41726924 - 41726968
Alignment:
Q  66 taaggatcctctccatttataaaaataaatggagaatatcattta 110  Q
    ||||||||||||||| ||||||||||||||| ||| | |||||||    
T  41726924 taaggatcctctccagttataaaaataaatgaagagtgtcattta 41726968  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 51982549 - 51982577
Alignment:
Q  70 gatcctctccatttataaaaataaatgga 98  Q
    |||||||||||||||||||||||||||||    
T  51982549 gatcctctccatttataaaaataaatgga 51982577  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 52255699 - 52255652
Alignment:
Q  70 gatcctctccatttataaaaataaatggagaatatcatttagaaagaga 118  Q
    |||||||||||||||||||||||||| ||| |||| ||||| |||||||    
T  52255699 gatcctctccatttataaaaataaattgag-atattatttataaagaga 52255652  T

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