View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_17 (Length: 316)
Name: NF15551_low_17
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 44695495 - 44695221
Alignment:
| Q |
12 |
gagcagcacagaggacactttttctttgttttgatttcaccttttaaatacattgatctcaaatctttttggagtctttgaggaa--attaattaatgtt |
109 |
Q |
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| T |
44695495 |
gagcatcacaaaggacactttttctttgttttgatttcaccttttaaatacattgatctcaaatctttttggagtctttgaggaattattaattaatgtt |
44695396 |
T |
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| Q |
110 |
ttgtacggcaggaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggctgatcgatccatc |
209 |
Q |
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| T |
44695395 |
ttgtacggcaggaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggctgatcgatccatc |
44695296 |
T |
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| Q |
210 |
atatcaacattacatttttccattttgccatgatgatgcacattgaaatgagagaaaaagctaacccttaattat |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695295 |
atatcaacattacatttttccattttgccatgatgatgcacattgaaatgagagaaaaagctaacccttaattat |
44695221 |
T |
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