View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_18 (Length: 307)
Name: NF15551_low_18
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_18 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 11485219 - 11485494
Alignment:
| Q |
15 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11485219 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
11485318 |
T |
|
| Q |
115 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaag |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11485319 |
aatgttcatgctattgatactagg--tgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaag |
11485416 |
T |
|
| Q |
215 |
ctttgagtccaaattataaaggaggtttgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggtttttag |
292 |
Q |
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| T |
11485417 |
ctttgagtccaaattataaaggaggattgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggtttttag |
11485494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 11478948 - 11479225
Alignment:
| Q |
15 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
114 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
11478948 |
tgaaacaagaggcacaaatacatatattcctcaaccttatggaatagaagttggtaatcatgaagaaattccaaaagggtatgtggaaaaatggttgatt |
11479047 |
T |
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| Q |
115 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaag |
214 |
Q |
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| T |
11479048 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtattgagtgtaagtgtgatttgtataatgttacaaaggatgaaaatggaaaaa |
11479147 |
T |
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| Q |
215 |
ctttgagtccaaattataaaggaggtttgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggtttttag |
292 |
Q |
| |
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||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479148 |
tattgagtccaaattataaggggggattgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggtttttag |
11479225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 11472556 - 11472833
Alignment:
| Q |
15 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
11472556 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
11472655 |
T |
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| Q |
115 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaag |
214 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
11472656 |
aatgttcatgctattgataccaggggtgtggaagatagaatggggtgtattgagtgtaagtgtgatttgtataatgttacaaaggatgaaaatggaaaaa |
11472755 |
T |
|
| Q |
215 |
ctttgagtccaaattataaaggaggtttgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggtttttag |
292 |
Q |
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||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
11472756 |
tattgagtccaaattataaggggggattgcaatgttgtcctgataatagtaagtgtaagttgagtaaaggatttttag |
11472833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 11462372 - 11462621
Alignment:
| Q |
15 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
114 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| | ||||||| |||||||||| ||||||||| | || |
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| T |
11462372 |
tgaaactagaggcacagatacatatattcctgacccttatggagtagaaattggtaatccttcacaaattcctaaagggtatgatgaaaaatggatgatc |
11462471 |
T |
|
| Q |
115 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatg---aaaatggag |
211 |
Q |
| |
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||||| ||||| |||||||| |||||||| ||||||| ||||||||||| ||||||||| ||||| | ||| |||||||| ||| || |||| |
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| T |
11462472 |
aatgtccatgcaattgatacaaggggtgtggaagatataatggggtgtattgagtgtaaatgtgacctatataatgttacaataaatgcattaactggaa |
11462571 |
T |
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| Q |
212 |
aagctttgagtccaaattataaaggaggtttgcaatgttgtcctgataat |
261 |
Q |
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|| |||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
11462572 |
aacctttaagtccaaattacaaaggaggtttaggatgttgtcctgataat |
11462621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 47322 - 47599
Alignment:
| Q |
15 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| ||||| || |||||||| || |
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| T |
47322 |
tgaaacaagaggcacaaatacatatattccagacccttatggtatagaagttggtaatccagctgaaattccaaaaggttatgtagagaaatggttgatg |
47421 |
T |
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| Q |
115 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaag |
214 |
Q |
| |
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||| |||||| ||||||||| |||||||| |||||||| ||||| |||| ||| || | ||||| | ||| |||||| || ||||||||||| || | |
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| T |
47422 |
aatattcatgttattgatacaaggggtgtggaagataggatgggatgtattgattgcagatgtgacctatataatgttactaaagatgaaaatggtgatg |
47521 |
T |
|
| Q |
215 |
ctttgagtccaaattataaaggaggtttgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggtttttag |
292 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||| ||||||||||||| |
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| T |
47522 |
ctttgagtccaaattataaagggggtttgcaatgttgtcctgataacactaagtgcaagctgaggaaagggtttttag |
47599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 21546654 - 21546928
Alignment:
| Q |
16 |
gaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatta |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| || | |
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| T |
21546654 |
gaaacaagaagcacaaatacatatattccagacccttatggtatagaagttggtaatcctgctgaaattccaaaagggtatgtggagaaatggttgatca |
21546753 |
T |
|
| Q |
116 |
atgttcatgctattgatactaggggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaagc |
215 |
Q |
| |
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|||||||||| |||||||| |||||||| || || | |||| |||| |||||| ||||| | || ||| ||||| ||||||||||| | || |
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| T |
21546754 |
atgttcatgcaattgatacgaggggtgtggatgaccgggtgggatgtattgagtgctcatgtgacctatacaatgtcacaaaagatgaaaatggtaatgc |
21546853 |
T |
|
| Q |
216 |
tttgagtccaaattataaaggaggtttgcaatgttgtcctgataatagtaagtgtaagctgagtaaagggttttt |
290 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| ||||| ||||| |
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|
| T |
21546854 |
tttgagtccaaattataaagggggtttgcaatgttgccctgataatagtaagtgcaagatgaggaaaggattttt |
21546928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 38227269 - 38227202
Alignment:
| Q |
67 |
ggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttattaatgttcatgctattgatac |
134 |
Q |
| |
|
|||||||||||||| |||||| |||||| || ||| |||||||| ||||||||||||| |||||||| |
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|
| T |
38227269 |
ggtaatcctgaagagattccacaagggtttgaggataaatggttgcttaatgttcatgccattgatac |
38227202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 38214875 - 38214779
Alignment:
| Q |
38 |
atattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttattaatgttcatgctattgatac |
134 |
Q |
| |
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||||||| || |||| ||| ||||| | |||||||||||||| |||||| |||||| || ||| |||||||| ||||||||||||| || ||||| |
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| T |
38214875 |
atattccggatccttttggtatagagataggtaatcctgaagagattccagaagggtttgaggagaaatggttggttaatgttcatgccatcgatac |
38214779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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