View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15551_low_19 (Length: 295)
Name: NF15551_low_19
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_19 |
 | |
|
| [»] scaffold1029 (2 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
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| [»] scaffold1033 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 24071827 - 24072094
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
24071827 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttctcataaacttgcttaaatatcaaagcttgtttgaca |
24071926 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaatatga--atatattgtaaattcagaacatatgtatatctattatcatacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24071927 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattaaaatatgaatatatattgtaaattcagaacatatgtatatctattaaaatact |
24072026 |
T |
|
| Q |
216 |
taccattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatatt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24072027 |
taccattctggaaattaatgctttgatagtaaaacagacttgattcaatgtttatagttggagatatt |
24072094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 28580199 - 28580474
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
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|
| T |
28580199 |
aaacctttggataatatcaatcaaataaaaactttccatcggatcttcgattttaacaagtttcttataaacttgcttgaatatcaaagcttgtttgaca |
28580298 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaacatatgtata----------tctatt |
207 |
Q |
| |
|
|| ||||| ||||||||||||||||||| | |||||||||||||||| |||| || ||||| |||||| |||||| |||||| || ||| |
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|
| T |
28580299 |
tatgtaacgtcctgaaaatgtaaaagtgtagattgatcagaacattgcaataaaaagatattctaaatttagaacaattgtatatatttgtacttcaatt |
28580398 |
T |
|
| Q |
208 |
atcatacgtaccattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatatt |
283 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||| |||||| |
|
|
| T |
28580399 |
aaaatacttaccattctggaaattaatgctttgataataaaacagacttgattcagtgtttatagctggggatatt |
28580474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 26316209 - 26316470
Alignment:
| Q |
23 |
tttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagt |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26316209 |
tttggatgatatcgatcaaataaaaactctccatcggatattcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgt |
26316308 |
T |
|
| Q |
123 |
aacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaac----------atatgtatatctattatcat |
212 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| ||||| || |||| || |||| || |
|
|
| T |
26316309 |
aacatcctgaaaatgtaaaagtgcagaatgatgagaacattgaaata-aaatatattgtaaatctagaacaactttatatatttgtacttcaattaaaat |
26316407 |
T |
|
| Q |
213 |
acgtaccattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttg |
275 |
Q |
| |
|
|| ||||||||| ||||||||| |||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
26316408 |
acttaccattctataaattaatgatttgatagtaaaacaaacttgattcagtgtttatggttg |
26316470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 28586356 - 28586606
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
28586356 |
aaacctttggataatatcgatcaaataaaaactttccatcggatcttcaattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgaca |
28586455 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaatatgaatatattgtaaattcagaacatatgtatatctattatcatacgta |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| || ||| |||| | |||| ||| || |
|
|
| T |
28586456 |
tatgtaacatcctgaaaatgtaaaagtgcagattgatcagaatattgaaataaaaatacatt---tctttgatacaactgtactccaattaaattactta |
28586552 |
T |
|
| Q |
218 |
ccattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttata |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
28586553 |
ccattctggaaattaatgctttgatagtaaaacagacttgattcagtgtttata |
28586606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 28575146 - 28575297
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||| |
|
|
| T |
28575146 |
aaacctttggatgatatcgatcaaataaaaactctccatcgaatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgcttaaca |
28575245 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaata |
169 |
Q |
| |
|
|| ||||||||||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
28575246 |
tatgtaacatcctgaaaaagtcaaagtgcagattgatcagaacattgaaata |
28575297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 28568306 - 28568457
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
28568306 |
aaacctttggataatatccatcaaataaaaactctccatcggatcttcgattttaacaagtttcttataaacttgcttaaatattaaagcttgtttgaca |
28568405 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaata |
169 |
Q |
| |
|
|| |||||||| ||| ||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
28568406 |
tatacaacatcctaaaattgtaagagtgcagattgatcagaatattgaaata |
28568457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 20618619 - 20618700
Alignment:
| Q |
87 |
aacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaata |
169 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||| || ||||||||||||||| || | |||||||||| |||||||||||| |
|
|
| T |
20618619 |
aacttgcttacacatcaaagcttgcttgacataaatagcatcctgaaaatgtagaacag-atattgatcataacattgaaata |
20618700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 28575353 - 28575414
Alignment:
| Q |
211 |
atacgtaccattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatag |
272 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
28575353 |
atacttaccattctagaaattaatgctttgataataaaacagacttgattcggtgtttatag |
28575414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 28568517 - 28568554
Alignment:
| Q |
211 |
atacgtaccattctggaaattaatgctttgatagtaaa |
248 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
28568517 |
atacttaccattctagaaattaatgctttgatagtaaa |
28568554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 3310 - 3159
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
3310 |
aaacctttggataatatcaatcaaataaaaactttccatcggatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgaca |
3211 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaata |
169 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
3210 |
tatgtagcatcctgaaaatgtaaaagtgcagattgatcagtactttgaaata |
3159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 3111 - 3034
Alignment:
| Q |
211 |
atacgtaccattctggaaattaatgctttgatagtaaa-----acggacttgattcaatgtttatagttggagatatt |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| |||||| |
|
|
| T |
3111 |
atacttaccattctggaaattaatgctttgatagtaaattaaaacagacttgattcagtgtttatagctggggatatt |
3034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 4579 - 4431
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4579 |
aaacctttggataatatcgatcaaataaaaactctccatgggatcttcgattttaacaagtttcttataaactttcttaaatatcaaagcttgtttgaca |
4480 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaat |
168 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4479 |
tataaaacatcctaaaaatgtaaaagtgc--attgatcagaacattgaaat |
4431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 4783 - 4635
Alignment:
| Q |
18 |
aaacttttggatgatatcgatcaaataaaaacactccatcggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgaca |
117 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4783 |
aaacctttggataatatcgatcaaataaaaactctccatgggatcttcgattttaacaagtttcttataaactttcttaaatatcaaagcttgtttgaca |
4684 |
T |
|
| Q |
118 |
taagtaacatcctgaaaatgtaaaagtgcatattgatcagaacattgaaat |
168 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4683 |
tataaaacatcctaaaaatgtaaaagtgc--attgatcagaacattgaaat |
4635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 3270 - 3159
Alignment:
| Q |
58 |
ggatcttcgattttaacaagtttgtcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgatcag |
157 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3270 |
ggatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattgatcag |
3171 |
T |
|
| Q |
158 |
aacattgaaata |
169 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3170 |
tactttgaaata |
3159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 3111 - 3034
Alignment:
| Q |
211 |
atacgtaccattctggaaattaatgctttgatagtaaa-----acggacttgattcaatgtttatagttggagatatt |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| |||||| |
|
|
| T |
3111 |
atacttaccattctggaaattaatgctttgatagtaaattaaaacagacttgattcagtgtttatagctggggatatt |
3034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 34812992 - 34812926
Alignment:
| Q |
217 |
accattctggaaattaatgctttgatagtaaaacggacttgattcaatgtttatagttggagatatt |
283 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
34812992 |
accattctgaaaattaatgctttgataataaaacagacttgattcggtgtttataggtggagatatt |
34812926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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