View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_2 (Length: 687)
Name: NF15551_low_2
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 11 - 670
Target Start/End: Complemental strand, 7094704 - 7094052
Alignment:
| Q |
11 |
agaaaatggttcgtaggagcttgtaatatctagcatggtattctacgtcgatctccatggagaacatgttttgatactacaaccaaaggcaaacacatgc |
110 |
Q |
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| T |
7094704 |
agaatatggtccgtaggagcttgaaatatctagcatggtattctacgtcgatctccatggagaacatgttttgatactacaaccaaaggcaaacacatgc |
7094605 |
T |
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| Q |
111 |
agcttagagccaatgtttgttttggcggtacaattgcagtagacgcacgtttggacaaactctacaatcagcagcttctcaaaaacaacaacaaatgtac |
210 |
Q |
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| T |
7094604 |
agcttagagccaatgtttgttttggcggtacaattgcagtagacgcgcgtttggacaaactctacaatcagcagcttctcaaaaacaacgacaaatgtac |
7094505 |
T |
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| Q |
211 |
atagagacacgatatttcacttgttgctgctaaaccaaacacgctcagaatgacaatggcgataagaactacagcaagcacattgatattgttaaaaatg |
310 |
Q |
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| T |
7094504 |
atagagacacgatatttcacttgttgctgctaaaccaaacacgctcagaatgacaatggcgataagaactacagcaaacacattgatattgttaaaaatg |
7094405 |
T |
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| Q |
311 |
atgtatgtattttgagcaagcaacgaagtgatgaaattgtgggcgatacggttgataaaattgaaaactttcctattacacctctaggtaatgccaccaa |
410 |
Q |
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| T |
7094404 |
atgtatgtattttgagcaagcaatgaagtgatgaaattgtgggcgatacggttgataaaattg-aaactttcctattacacctctaggtaatgccaccaa |
7094306 |
T |
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| Q |
411 |
ttttagtttagaataaacggtgatagtgaattcacatcaataagatttaaaactccaaaatatcgctcgaagttacattacataaaaaatgtaagacttt |
510 |
Q |
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| T |
7094305 |
ttttagtttagaataaacggtgatagtgaattcacatcaataagatttaaaactccaaaatatcgctcgaag-----ttacataaaaaatgtaagacttt |
7094211 |
T |
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| Q |
511 |
atatacgtttgacttttacacgagttttgtttcttgtccaccaagattttgtattcttttacaataattcaattttaggtaaaataaaagatatagtact |
610 |
Q |
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| T |
7094210 |
atatacgtttgacttttacacgagttttgtttcttgtccaccaagattttgtattcttttacaataattcaattttaggtaaaat-aaagatatagtact |
7094112 |
T |
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| Q |
611 |
ccaagctattaaattaatctaacaatcaagatttaatgagtaatcaatagatgatccaaa |
670 |
Q |
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| T |
7094111 |
ccaacctattaaattaatctaacaatcaagatttaatgagtaatccgaagatgatccaaa |
7094052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 30859615 - 30859740
Alignment:
| Q |
118 |
agccaatgtttgttttggcggtacaattgcagtagacgcacgtttggacaaactctacaatcagcagcttctcaaaaacaacaacaaatgtacatagaga |
217 |
Q |
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| T |
30859615 |
agcctatgtttgttttagcgatacaattactgtggacatacgtttggacaaaatctacaattagcaacttctcaaaaaccacaacaaatgtacataggga |
30859714 |
T |
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| Q |
218 |
cacgatatttcacttgttgctgctaa |
243 |
Q |
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| T |
30859715 |
cacaatattttccttgttgccgctaa |
30859740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 5528857 - 5528939
Alignment:
| Q |
123 |
atgtttgttttggcggtacaattgcagtagacgcacgtttggacaaactctacaatcagcagcttctcaaaaacaacaacaaat |
206 |
Q |
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| T |
5528857 |
atgtttgttttagtggtacaatta-agtagatgtacgtttggactaactctacaattagtagcttttcaaaaaccacgacaaat |
5528939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 15281668 - 15281797
Alignment:
| Q |
126 |
tttgttttggcggtacaattgcagtagacgcacgtttggacaaactctacaatcagcagcttctcaaaaacaacaacaaatgtacatagagacacgatat |
225 |
Q |
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| T |
15281668 |
tttgttttagcagtacaattgtcatagacgcacgtttggacaaactctaaaattggcagcttctcaacaaccacgacaaatgtacatagagacgccatgt |
15281767 |
T |
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| Q |
226 |
ttcacttgttgctgctaaaccaaacacgct |
255 |
Q |
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| T |
15281768 |
ttcccttgttgtcgctaaactaaacacgct |
15281797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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