View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15551_low_27 (Length: 236)

Name: NF15551_low_27
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15551_low_27
NF15551_low_27
[»] chr8 (2 HSPs)
chr8 (41-217)||(33608025-33608201)
chr8 (48-97)||(10328766-10328815)
[»] chr6 (1 HSPs)
chr6 (47-94)||(7984664-7984711)
[»] chr2 (2 HSPs)
chr2 (43-94)||(3234635-3234686)
chr2 (41-94)||(9559739-9559792)
[»] chr7 (1 HSPs)
chr7 (47-97)||(25119914-25119964)
[»] chr4 (1 HSPs)
chr4 (47-96)||(43771934-43771983)
[»] chr1 (1 HSPs)
chr1 (47-95)||(51049915-51049963)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 33608025 - 33608201
Alignment:
Q  41 agttattacttttgtatgcttaaacaatgtcctaagagcaattgttaacatttttcaaaattataacttaacttgatttaattaggagatttattgattt 140  Q
    ||||||||||||||||||||||||||||| ||||  | || |||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  33608025 agttattacttttgtatgcttaaacaatgccctagaaacacttgttagcattttttaaaattatagcttcacttgatttaattaggagatttattgattt 33608124  T
Q  141 aaggtgaaaacaaaattgtaagtgttaaaacatctatctcacttgcatcatagaactaacttagactacatattaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33608125 aaggtgaaaacaaaattgtaagtgttaaaacatctatctcacttgcatcatagaactaacctagactacatattaat 33608201  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 10328766 - 10328815
Alignment:
Q  48 acttttgtatgcttaaacaatgtcctaagagcaattgttaacatttttca 97  Q
    ||||||| |||||||||||||||| |||| ||| |||||| |||||||||    
T  10328766 acttttgaatgcttaaacaatgtcataagcgcatttgttagcatttttca 10328815  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 7984664 - 7984711
Alignment:
Q  47 tacttttgtatgcttaaacaatgtcctaagagcaattgttaacatttt 94  Q
    |||||||| ||||||||||||||||||||| ||| |||||| ||||||    
T  7984664 tacttttggatgcttaaacaatgtcctaagggcacttgttagcatttt 7984711  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 3234686 - 3234635
Alignment:
Q  43 ttattacttttgtatgcttaaacaatgtcctaagagcaattgttaacatttt 94  Q
    |||||||||||| |||||||||||||| |||||| ||| |||||| ||||||    
T  3234686 ttattacttttggatgcttaaacaatgccctaagggcacttgttagcatttt 3234635  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 9559739 - 9559792
Alignment:
Q  41 agttattacttttgtatgcttaaacaatgtcctaagagcaattgttaacatttt 94  Q
    ||||| || ||||| ||||||||||||||||||||| ||| ||||||| |||||    
T  9559739 agttaatatttttgaatgcttaaacaatgtcctaagggcacttgttaatatttt 9559792  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 25119964 - 25119914
Alignment:
Q  47 tacttttgtatgcttaaacaatgtcctaagagcaattgttaacatttttca 97  Q
    ||||||| ||||||||||||||||| | || ||| ||||||||||||||||    
T  25119964 tacttttatatgcttaaacaatgtctttagggcacttgttaacatttttca 25119914  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 43771934 - 43771983
Alignment:
Q  47 tacttttgtatgcttaaacaatgtcctaagagcaattgttaacatttttc 96  Q
    |||||||| |||||||||||||||| |||| ||| |||||| ||||||||    
T  43771934 tacttttgaatgcttaaacaatgtcataagggcacttgttagcatttttc 43771983  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 51049915 - 51049963
Alignment:
Q  47 tacttttgtatgcttaaacaatgtcctaagagcaattgttaacattttt 95  Q
    ||||||| ||||||||||||||| ||| |||||| |||||| |||||||    
T  51049915 tacttttatatgcttaaacaatgcccttagagcacttgttagcattttt 51049963  T

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