View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_3 (Length: 667)
Name: NF15551_low_3
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 8 - 649
Target Start/End: Original strand, 30888685 - 30889327
Alignment:
| Q |
8 |
tattttattatgacatcgcttctattgtttatttgtgtt-attgtcattgttaagatatgtatttaattattggacacagcattgacacgttgacaccgg |
106 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30888685 |
tattttattatggcatctcttctattgtttatttgtgtttattgtcattgttaagatatgtatttaattactggacacagcattgacacgtcgacaccgg |
30888784 |
T |
|
| Q |
107 |
taaaaatttaatgagacgagttaattgaatgtatttacatgtatcagtgttgtgtcaatgtccgaacacgccttgtgtcgtgctaacttgtgttgtgtat |
206 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888785 |
taaaaatttaatgagacaagttaattgaatgtatttacatgtatcagtgttgtgtcaatgtccgaacacgccttgtgtcgtgctaacttgtgttgtgtat |
30888884 |
T |
|
| Q |
207 |
gatactacaaaatcactgcaggtggcatgagatacatcaaacaagaattcaacttagaaactgatccaacgcttgaaggactaattgtgtccatgtcatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888885 |
gatactacaaaatcactgcaggtggcatgagatacatcaaacaagaattcaacttagaaactgatccaacgcttgaaggactaattgtgtccatgtcatt |
30888984 |
T |
|
| Q |
307 |
tctcactggaacatttgtaacaatattctccggcacagtttcagatatgttcggaaggcgtccgatgttaataacatcctcaatcatgtttttcttaagt |
406 |
Q |
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| T |
30888985 |
tctcactggaacatttgtaacaatattctccggcacagtttcagatatgttcggaaggcgtccgatgttaataacatcctcaatcatgtttttcttaagt |
30889084 |
T |
|
| Q |
407 |
ggtttagttatgttatgggctccaaatgttcctgttgtactgttttcaaggctattgaatggaattgcaattgcattagccatcagtctaactcctctct |
506 |
Q |
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| T |
30889085 |
ggtttagttatgttatgggctccaaatgttcctgttgtactgttttcaaggctattgaatggaattgcaattgcattagccatcagtctaactcctctct |
30889184 |
T |
|
| Q |
507 |
acatatctgagatagcaccacctgatataagaggcttgctcaatactcttcctatgttttcatcctctttgggaatgtttttggcttacatcttggtttt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889185 |
acatatctgagatagcaccacctgatataagaggcttgctcaatactcttcctatgttttcatcctctttgggaatgtttttggcttacatcttggtttt |
30889284 |
T |
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| Q |
607 |
ctctatatccttgatggattcaccaagttggagaggcatgctt |
649 |
Q |
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| T |
30889285 |
ctctatatccttgatggattcaccaagttggagaggcatgctt |
30889327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 540
Target Start/End: Complemental strand, 9953218 - 9953177
Alignment:
| Q |
499 |
tcctctctacatatctgagatagcaccacctgatataagagg |
540 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9953218 |
tcctctttacatatctgagatagcaccacctgatataagagg |
9953177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 540
Target Start/End: Complemental strand, 19696046 - 19696005
Alignment:
| Q |
499 |
tcctctctacatatctgagatagcaccacctgatataagagg |
540 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19696046 |
tcctctttacatatctgagatagcaccacctgatataagagg |
19696005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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