View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_4 (Length: 514)
Name: NF15551_low_4
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 18604671 - 18605056
Alignment:
| Q |
10 |
attatactttatgaaatattatcaattagataaatctcaaattgttctatataccttcaagcacttgacaatgatattttaatacattataaattcaaaa |
109 |
Q |
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| T |
18604671 |
attatactttatgaaatattatcaattagataaatctcaaattgttccatataccttcaagcacttgacaatgatatcttaatacattataaattcaaaa |
18604770 |
T |
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| Q |
110 |
gattataatctaaatgattaaaaacatgaagtctaccaaatgttaatgtagactttcaaaatatatccaagtgttatagctaatagttaacttatctcat |
209 |
Q |
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| T |
18604771 |
gattataatctaaatgattaagaacatgaagtctac-aaatgttaatgtagactttcaaaatatatccaagtgttataactaatagttaacttatctcat |
18604869 |
T |
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| Q |
210 |
tacaataaacaagacataatcttccatctttccatgcttgaataaaggtaggtcttcatcaaattcttcaagttgaatatcatgaaagtcatcatcttag |
309 |
Q |
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| T |
18604870 |
tacaataaacaagacataatcttccatctttccatgcttgaataaaggtaggtcttcatcaaattcttcaagttgaatatcatgaaagtcataatcttag |
18604969 |
T |
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| Q |
310 |
agctcattttgaggatcatcatcttgaggatcatcttcatgtctaacctaaaaaggatcatctaggttcgtattttaataaaaaggatcatctagattaa |
409 |
Q |
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| T |
18604970 |
agctcatt---------------ttgaggatcatcttcatgtctaacctaaaaaggatcatctaggttcgtattttaataaaaaggatcatctagattaa |
18605054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 18605301 - 18605408
Alignment:
| Q |
407 |
taaggaagaactcacacccaccagtaaggcccgaagaaaacccagcggagcagatgatactcgacatccaaccatgactcgtgggaagaatagaggaagc |
506 |
Q |
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| T |
18605301 |
taaggaagaattcacacccaccagtaaggcccaaagaaaacccagcggagcagatgatacttgacatccaaccaggactcgtgggaagaatagaggaagc |
18605400 |
T |
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| Q |
507 |
aagctcgg |
514 |
Q |
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| T |
18605401 |
aagctcgg |
18605408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 4956827 - 4956901
Alignment:
| Q |
24 |
aatattatcaattagataaatctca-aat-tgttctatataccttcaagcacttgacaatgatattttaatacatt |
97 |
Q |
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| T |
4956827 |
aatattatcaattagataattctcataatatgttc-atatatcttcaagtacttgacaatgatatcttaatacatt |
4956901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 4956908 - 4956984
Alignment:
| Q |
126 |
attaaaaacatgaagtctaccaaatgttaatgtagactttcaaaatatatccaagtgttatagctaatagttaactt |
202 |
Q |
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| T |
4956908 |
attaataacatgatttgtacaaaatgttaatgtcgactttcaaaatacatcaaagcgttatagttaataattaactt |
4956984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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