View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_5 (Length: 502)
Name: NF15551_low_5
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_5 |
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| [»] scaffold0338 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 29203461 - 29203928
Alignment:
| Q |
17 |
gagatgcgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203461 |
gagatgcgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttca |
29203560 |
T |
|
| Q |
117 |
tctggtttcaggacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtcaatattagacacagggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203561 |
tctggtttcaggacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtcaatattagacacagggt |
29203660 |
T |
|
| Q |
217 |
cagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203661 |
cagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataat |
29203760 |
T |
|
| Q |
317 |
atggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203761 |
atggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagca |
29203860 |
T |
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| Q |
417 |
ttgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttgg |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29203861 |
ttgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacattgg |
29203928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 12648415 - 12647948
Alignment:
| Q |
17 |
gagatgcgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttca |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648415 |
gagatgtgtaattcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttca |
12648316 |
T |
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| Q |
117 |
tctggtttcaggacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtcaatattagacacagggt |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12648315 |
tcaggtttcaggacaaccatgtattttggtgatttttatgatcgataagatttttccagatattttctaaaaccgctaatgtcaatattagacacagggt |
12648216 |
T |
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| Q |
217 |
cagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648215 |
cagcccaagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggctgaaaaaatgcctcgaaaaaatttaatatagttataaacatataat |
12648116 |
T |
|
| Q |
317 |
atggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagca |
416 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648115 |
atgacaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagca |
12648016 |
T |
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| Q |
417 |
ttgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttgg |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648015 |
ttgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttgg |
12647948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 21486099 - 21486052
Alignment:
| Q |
223 |
aagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggc |
270 |
Q |
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||||||||||| || ||||| || |||||||||||||||||||||||| |
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| T |
21486099 |
aagggtcaagcaactcaagtaagggctttaggcctcaaaattttgggc |
21486052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 13511015 - 13510919
Alignment:
| Q |
387 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttgg |
484 |
Q |
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|||||||| ||||| | ||||| |||||||||||||| |||| ||| |||| ||||| ||| |||||||| ||||||||||||||||| ||| ||||| |
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| T |
13511015 |
aacttgat-ttattatgcttttaataagcattgtgtt-attttttttaattccaaaagacctaatcataaaatttgctttaggcctcttgacatgttgg |
13510919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0338 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0338
Description:
Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 18424 - 18339
Alignment:
| Q |
244 |
agagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaat |
329 |
Q |
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|||| |||||||||||| |||||||| ||| |||| ||||| ||| || | ||| ||| |||||| |||||||||| || |||||| |
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| T |
18424 |
agagttttaggcctcaagattttgggttaagaaaaggcctcaaaataagtcaatttagctataaatatataatatgacatactaat |
18339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 33384635 - 33384715
Alignment:
| Q |
249 |
tttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaat |
329 |
Q |
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|||||||||||| ||||||| ||| |||| ||||| ||| || | ||| |||||||||| |||||||||| || |||||| |
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| T |
33384635 |
tttaggcctcaagattttggattaaaaaaaggcctcaaaataagtcaatttagttataaatatataatatgacatactaat |
33384715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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