View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15551_low_8 (Length: 374)
Name: NF15551_low_8
Description: NF15551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15551_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 34864695 - 34864338
Alignment:
| Q |
1 |
tggcagagagaaatggattggcttctttgtgttggtgatcacattgttgagttaatgccttcttggcaaacatatccagatggtagtaagcaagaggtat |
100 |
Q |
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| T |
34864695 |
tggcagagagaaatggattggcttctttgtgttggtgatcacattgttgagttaatgccttcttggcaaacatatccagatggtagtaagcaagaggtat |
34864596 |
T |
|
| Q |
101 |
aattgaattgaattgaatccttatatgttaatttaatgtacttttcaacaaagattaataaagaggcccaactcaatactttgtatgattagggaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
34864595 |
aattgaattgaattgaatccttatatgttaatttaatgtacttttcaataaagattaataaataggcccaactctatactttgtatgattagggaatctt |
34864496 |
T |
|
| Q |
201 |
gtagacatgttgtcaacacattgtaagtcgtttga----ttgaaatagaacggtcgatatttcatgtttggtaaataagtacaaaacataataaattatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34864495 |
gtagacatgttgtcaacacattgtaagtcgtttgattgattgaaatagaacggtcgttatttcatgtttggtaaataagtacaaaacattataaattatt |
34864396 |
T |
|
| Q |
297 |
gatcaaaatccgatggttcagatggtagtaagttagaggtataatctaattgaatcct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
34864395 |
gatcaaaatccgatggttcagatggtagtaagttagaggtgtaatcaaattgaatcct |
34864338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 77 - 354
Target Start/End: Complemental strand, 34864142 - 34863868
Alignment:
| Q |
77 |
cagatggtagtaagcaagaggtataattgaattgaattgaatccttatatgttaatttaatgtacttttcaacaaagattaataaagaggcccaactcaa |
176 |
Q |
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| T |
34864142 |
cagatggtagtaagttagaggtataatcgaattgaat-----ccttatatgtgaattttttgaccttttcaataaagattaataaataggcccaactcta |
34864048 |
T |
|
| Q |
177 |
tactttgtatgattagggaa--tcttgtagacatgttgtcaacacattgtaagtcgtttgattgaaatagaacggtcgatatttcatgtttggtaaataa |
274 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34864047 |
tactttgtatgattagggaaaatcttgtagacatgttgtcaacacattgtaagtcgtttgattgaaatagaacggtcaatatttcatgtttggtaaataa |
34863948 |
T |
|
| Q |
275 |
gtacaaaacataataaattattgatcaaaatccgatggttcagatggtagtaagttagaggtataatctaattgaatcct |
354 |
Q |
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| T |
34863947 |
gtacaaaacattataaattattgatcaaaatccgatggttcagatggtagtaagttagaggtataatcgaattgaatcct |
34863868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 111 - 354
Target Start/End: Complemental strand, 34864348 - 34864103
Alignment:
| Q |
111 |
aattgaatccttatatgttaatttaatgtacttttcaacaaagattaataaagaggcccaactcaatactttgtatgattagggaa--tcttgtagacat |
208 |
Q |
| |
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|||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
34864348 |
aattgaatccttatatgtgaattttttgaccttttcaataaagattaataaataggcccaactctatactttgtatgattagggaaaatcttgtagacat |
34864249 |
T |
|
| Q |
209 |
gttgtcaacacattgtaagtcgtttgattgaaatagaacggtcgatatttcatgtttggtaaataagtacaaaacataataaattattgatcaaaatccg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34864248 |
gttgtcaacacattgtaagtcgtttgattgaaatagaacggtcaatatttcatgtttggtaaataagtacaaaacattataaattattgatcaaaatccg |
34864149 |
T |
|
| Q |
309 |
atggttcagatggtagtaagttagaggtataatctaattgaatcct |
354 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34864148 |
atggttcagatggtagtaagttagaggtataatcgaattgaatcct |
34864103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 77 - 354
Target Start/End: Complemental strand, 34863907 - 34863633
Alignment:
| Q |
77 |
cagatggtagtaagcaagaggtataattgaattgaattgaatccttatatgttaatttaatgtacttttcaacaaagattaataaagaggcccaactcaa |
176 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||| || |||||||| ||||||||||||| ||||||||||| | |
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| T |
34863907 |
cagatggtagtaagttagaggtataatcgaattgaat-----cctaatatgtgaattttttgaccttttcaataaagattaataaataggcccaactcta |
34863813 |
T |
|
| Q |
177 |
tactttgtatgattagggaa--tcttgtagacatgttgtcaacacattgtaagtcgtttgattgaaatagaacggtcgatatttcatgtttggtaaataa |
274 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34863812 |
tactttgtatgattagggaaaatcttgtagacatgttgtcaacacattgtaagtcgtttgattgaaatagaacggtcaatatttcatgtttggtaaataa |
34863713 |
T |
|
| Q |
275 |
gtacaaaacataataaattattgatcaaaatccgatggttcagatggtagtaagttagaggtataatctaattgaatcct |
354 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34863712 |
gtacaaaacattataaattattgatcaaaatccgatggttcagatggtagtaagttagaggtataatcgaattgaatcct |
34863633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 34863672 - 34863499
Alignment:
| Q |
77 |
cagatggtagtaagcaagaggtataattgaattgaattgaatccttatatgttaatttaatgtacttttcaacaaagattaataaagaggcccaactcaa |
176 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||| || |||||||| ||||||||||||| |||||| |||| |
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| T |
34863672 |
cagatggtagtaagttagaggtataatcgaattgaat-----cctaatatgtgaattttttgaccttttcaataaagattaataaataggccctactctc |
34863578 |
T |
|
| Q |
177 |
tactttgtatgattagggaatcttgtagacatgttgtcaacacattgtaagtcgtttgattgaaatagaacggtcgatattt |
258 |
Q |
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||||| |||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34863577 |
tacttcgtatgattagggaatcttgtagtca---tgtcaacgcattggaagtcgtttgattgaaatagaacggtcgatattt |
34863499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6265250 - 6265168
Alignment:
| Q |
1 |
tggcagagagaaatggattggcttctttgtgttggtgatcacattgttgagttaatgccttcttggcaaacatatccagatgg |
83 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||| ||||||| |||||||| || | |||| |||||||||||| ||||||||| |
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| T |
6265250 |
tggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaattcaagcctacttggcaaacatttccagatgg |
6265168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31129851 - 31129769
Alignment:
| Q |
1 |
tggcagagagaaatggattggcttctttgtgttggtgatcacattgttgagttaatgccttcttggcaaacatatccagatgg |
83 |
Q |
| |
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||||| ||||| ||||| |||||| || ||||| |||||||||||||||| ||||| |||||||||||||||| ||| ||||| |
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| T |
31129851 |
tggcaaagagagatggaatggcttgttagtgttagtgatcacattgttgaattaataccttcttggcaaacatttcctgatgg |
31129769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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