View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15552_high_1 (Length: 615)
Name: NF15552_high_1
Description: NF15552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15552_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 31663403 - 31663833
Alignment:
| Q |
7 |
gattatactaatagcaataataagataagtattatatggaagaggtagagacctgttgcattcttgcagagatatattcatagtgttcattcagttatgc |
106 |
Q |
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| T |
31663403 |
gattataataatagcaataataagataagtattatatggaagaggtagagacctgttgcattcttgcagagatatattcatagtgttcattcagttatgc |
31663502 |
T |
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| Q |
107 |
ttgtaggagataagttactttttgtccatcataaatcttctgagtaatctacattcatcaaggtaatacaaaattacaacaagaaatgcatatctacata |
206 |
Q |
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| T |
31663503 |
ttgtaggagataagttactttttgtccatcataaatcttctgagtaatctacattcatcaaggtaatacaaaattacaacaagaaatgcatatctacata |
31663602 |
T |
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| Q |
207 |
tacatatttagctgcctggtggtaaaaaattgaaccttgagtcgttgatgtaaataatgacagttttcactatcaaagaatcttgttctggcaccagcag |
306 |
Q |
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| T |
31663603 |
tacatatttagctgcctggtggtaaaaaattgaaccttgagtcgttgatgtaaataatgacagttttcactatcaaagaatcttgttctggcaccagcag |
31663702 |
T |
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| Q |
307 |
caacctacccaatcaaacacaagaaacatgagagaatttgatataaaaagtgctacaaaaggacttgttataggattagaattaaaaacaccaaaaagta |
406 |
Q |
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| T |
31663703 |
caacctacccaatcaaacacaagaaacatgagagaatttgatataaaaagtgctacaaaaggacttattataggattagaattaaaaacaccaaaaagta |
31663802 |
T |
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| Q |
407 |
aatcattttccttctgccaattaggataagt |
437 |
Q |
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| T |
31663803 |
aatcattttccttctgccaattaggataagt |
31663833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 460 - 597
Target Start/End: Original strand, 31663830 - 31663967
Alignment:
| Q |
460 |
aagtaaaccattgacttttgtatgacttgaagctagtgaactgaatgaaaagagttaaccctaaattcttgactcagtggttcacttgaatcatcttcat |
559 |
Q |
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| T |
31663830 |
aagtaaaccattgacttttgtatgacttgaagctagtgaactgaatgaaaagagttaaccctaaattcttgactcagtggttcacttgaatcatcttcat |
31663929 |
T |
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| Q |
560 |
tctcattgttatcttcagaagttggaatgtcaaatcta |
597 |
Q |
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| T |
31663930 |
tctcattgttatcttcagaagttggaatgtcaaatcta |
31663967 |
T |
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