View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15553_high_1 (Length: 590)
Name: NF15553_high_1
Description: NF15553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15553_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 285 - 581
Target Start/End: Original strand, 46752389 - 46752681
Alignment:
| Q |
285 |
atagtaaggagtgcaaactattttgtcatgttttagggttgtggcaaaagacactgtttcgtatttcttttaacataatatgggtctcagaaagcttcag |
384 |
Q |
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| T |
46752389 |
atagtaaggagtgcaaactattttgtcatgttttagggttgtggcaaaagacactggttcgtatttcttttaacata----gggtctcagaaagcttcag |
46752484 |
T |
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| Q |
385 |
tgcatggtcactatttggattggaaccttctttgcaatcatggctgttaatactagctgatacagttgttaatgaagctactgatattttgttttattct |
484 |
Q |
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| T |
46752485 |
tgcatggtcactatttggattggaaccttctttgcaatcatggctgttaatactagctgatacagttgttaatgaagctgctgatattttgttttattct |
46752584 |
T |
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| Q |
485 |
aaattctaaaagatcttttttcagctaaattttatataaataaatctatcaatcttttagatttttgtgggtgcaatcttaccagaacccttcatct |
581 |
Q |
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| T |
46752585 |
aaattctaaaagatcttttttcagctaaattttatataaataaatctatcaatcttttagatttttgtgggtgcaatcttaccagaacccttcatct |
46752681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46752116 - 46752341
Alignment:
| Q |
1 |
cgacttcaatttttaaccgaaatcattattataacttaattaatctgcacatttaactatggagactaatctcatgaaataagatttctttagaaaaaga |
100 |
Q |
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| T |
46752116 |
cgacttcaatttttaaccgaaatgattattataacttaattaatctgcacatttaactatggagactaatctcatgaaacaagatttctttataacaaga |
46752215 |
T |
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| Q |
101 |
catctaaaatccaaagtcagtggtggagagccttgctaaacctatggcccccatgcttgccttatttgaacaaattttcagtgctccaataataatgaac |
200 |
Q |
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| T |
46752216 |
catctaaaatccaaagtcagtggtggagagccttgctaaacctatggcccccatgcttgccttatttgaacaaattttcagtgctccaataataatgaac |
46752315 |
T |
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| Q |
201 |
actcgatactcctctctgttatagtt |
226 |
Q |
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| T |
46752316 |
actcgatactcctctctattatagtt |
46752341 |
T |
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