View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15553_high_4 (Length: 310)
Name: NF15553_high_4
Description: NF15553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15553_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 51236386 - 51236657
Alignment:
| Q |
23 |
attccgtctcggcctttggcaaaattggctaacactcaaaaggctcctgcaattgtccaactatttcactccttaaagaatcaggacacgaagaaagact |
122 |
Q |
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| T |
51236386 |
attccgtctcggcctttggcaaaattggctaacactcaaaaggctcctgcagttgtccaactatttcactccttaaagaatcaggacacgaagaaagact |
51236485 |
T |
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| Q |
123 |
tgaaaggatcaattaatcatcagaaaccgataactaacagtgcacacaatagcattgtaggagaaattcaaaaccgatcagctcatcttttagcagtaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51236486 |
tgaaaggatcaattaatcatcagaaaccgataactaacagtgcacacaatagcattgtaggagaaattcaaaaccgatcagctcatcttttagcagtaag |
51236585 |
T |
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| Q |
223 |
tattgcattcaattgtgttaactaactttcaaatttattctattaatcaatgagtgatgactgatatgactg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51236586 |
tattgcattcaattgtgttaactaactttcaaatttattctattaatcaatgagtgatgactgatatgactg |
51236657 |
T |
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