View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15553_low_2 (Length: 398)
Name: NF15553_low_2
Description: NF15553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15553_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 30351164 - 30350788
Alignment:
| Q |
11 |
cacagatacaacaaacatcgcggagagagagaggagtctgaaggaagggaagtgaggtttcatgatcgaaacacaacaacacccatagaatgaggtttca |
110 |
Q |
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| T |
30351164 |
cacagatacaacaaacatcgcggagagagagaggagtctgaaggaagggaagtgaggtttcatgatcgaaacacaacaacacccatagaatgaggtttca |
30351065 |
T |
|
| Q |
111 |
gaatcagggaatcgccgcatgtgacatggccacggttgatgtgcaaggtcggattggaaaacaaagagagtgggagctaagaagattgaaggacaaaatt |
210 |
Q |
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| T |
30351064 |
gaatcagggaatcgccgcatgtgacatggccacggttgatgtgcaaggtcggattggaaaacaaagagagtgggagctaagaagattgaaggacaaaatt |
30350965 |
T |
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| Q |
211 |
tacagggtggaagattttctagtttggnnnnnnntaaaggaacaaaggagagtgatagactttgacaaaatttctaggaaaatttgtgggtctgttttgt |
310 |
Q |
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| T |
30350964 |
tacagggtggaagattttctagtttggaaaaaaataaaggaacaaaggagagtgatagactttgacaaaatttctaggaaaatttgtgggtctgttttgt |
30350865 |
T |
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| Q |
311 |
ttttggtgatgtggtaataagttggtggtgttggtagagagaagatctaagaaggagcaagagatggtagtgatgat |
387 |
Q |
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| T |
30350864 |
ttttggtgatgtggtaataagttggtggtgttggtagagagaagatctaagaaggagcaagagatggtagtgatgat |
30350788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 144 - 382
Target Start/End: Original strand, 12869312 - 12869553
Alignment:
| Q |
144 |
ggttgatgtgcaaggtcggattggaaaacaaagagagtgggagctaagaagattgaaggacaaaatttacagggtggaagattttctag-tttggnnnnn |
242 |
Q |
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| T |
12869312 |
ggttgatgtgcaaggtcggatcggaaaacaaagagagtgggagctaataagattgaaggacaaaatttatagtgtggaatattttttggatctggaaaaa |
12869411 |
T |
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| Q |
243 |
nntaaaggaacaaaggagag----tgatagactttgacaaaatttctaggaaaatttgtgggtctgttttgtttttggtgatgtggtaataag-ttggtg |
337 |
Q |
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|||||| ||||||||||| |||||| |||||||||||||| || ||||||||||||| || |||||||||||||| |||||| |||| |||||| |
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| T |
12869412 |
tataaaggtacaaaggagagtgactgataggctttgacaaaatttttacgaaaatttgtgggcctattttgtttttggtgcggtggtagtaagtttggtg |
12869511 |
T |
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| Q |
338 |
gtgttggtagagagaagatctaagaaggagcaagagatggtagtg |
382 |
Q |
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| T |
12869512 |
gtgttggtagagagaagatct---aaggagcaagagatagtagtg |
12869553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 12869111 - 12869247
Alignment:
| Q |
13 |
cagatacaacaaacatcgcggagagagagaggagtctgaaggaagggaagtgaggtttcatgatcgaaacacaacaacacccatagaatgaggtttcaga |
112 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| | |
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| T |
12869111 |
cagatacaacaaatttcgcggaga--gagaggagtctgaaggaagggaagtgaggtttcacgatcgaaacgcaacaacacccatgaaatgaggtttcaaa |
12869208 |
T |
|
| Q |
113 |
atcagggaatcgccgcatgtgacatggccacggttgatg |
151 |
Q |
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| T |
12869209 |
atcagggaatctccgcatgtgacatggccacggtcgatg |
12869247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 11397717 - 11397766
Alignment:
| Q |
246 |
aaaggaacaaaggagagtgatagactttgacaaaatttctaggaaaattt |
295 |
Q |
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||||||| |||||||||||||||||||||||||| || | ||||||||| |
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| T |
11397717 |
aaaggaatgaaggagagtgatagactttgacaaaaattatgggaaaattt |
11397766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 19825825 - 19825909
Alignment:
| Q |
33 |
gagagagagaggagtctgaaggaagggaagtgaggtttcatgatcgaaacacaacaacacccatagaatgaggtttcagaatcag |
117 |
Q |
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| T |
19825825 |
gagagagagaggagtatgaaggaagtgaagtgaggtttctagatcgaaacgcagcagcaaccatggaatgaagtttcaggatcag |
19825909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 19826009 - 19826057
Alignment:
| Q |
148 |
gatgtgcaaggtcggattggaaaacaaagagagtgggagctaagaagat |
196 |
Q |
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| T |
19826009 |
gatgtgcaaggtcggatcggaaaacgaagagagtgggagctaataagat |
19826057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 6243796 - 6243753
Alignment:
| Q |
254 |
aaaggagagtgatagactttgacaaaatttctaggaaaatttgt |
297 |
Q |
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||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
6243796 |
aaaggagagtgatagactttgacaaaaattatgggaaaatttgt |
6243753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 38595180 - 38595229
Alignment:
| Q |
246 |
aaaggaacaaaggagagtgatagactttgacaaaatttctaggaaaattt |
295 |
Q |
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||||||| |||||||||||||||||||||||||| || | ||||||||| |
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| T |
38595180 |
aaaggaatgaaggagagtgatagactttgacaaaaattatgggaaaattt |
38595229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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