View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15553_low_3 (Length: 313)
Name: NF15553_low_3
Description: NF15553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15553_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46752116 - 46752341
Alignment:
| Q |
1 |
cgacttcaatttttaaccgaaatcattattataacttaattaatctgcacatttaactatggagactaatctcatgaaataagatttctttagaaaaaga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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| T |
46752116 |
cgacttcaatttttaaccgaaatgattattataacttaattaatctgcacatttaactatggagactaatctcatgaaacaagatttctttataacaaga |
46752215 |
T |
|
| Q |
101 |
catctaaaatccaaagtcagtggtggagagccttgctaaacctatggcccccatgcttgccttatttgaacaaattttcagtgctccaataataatgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46752216 |
catctaaaatccaaagtcagtggtggagagccttgctaaacctatggcccccatgcttgccttatttgaacaaattttcagtgctccaataataatgaac |
46752315 |
T |
|
| Q |
201 |
actcgatactcctctctgttatagtt |
226 |
Q |
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||||||||||||||||| |||||||| |
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| T |
46752316 |
actcgatactcctctctattatagtt |
46752341 |
T |
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