View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15553_low_6 (Length: 246)

Name: NF15553_low_6
Description: NF15553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15553_low_6
NF15553_low_6
[»] chr1 (7 HSPs)
chr1 (1-227)||(17408574-17408800)
chr1 (19-73)||(25934653-25934707)
chr1 (25-73)||(34371750-34371798)
chr1 (18-73)||(9828081-9828136)
chr1 (19-52)||(12918992-12919025)
chr1 (94-143)||(29856773-29856822)
chr1 (19-67)||(41597449-41597497)
[»] chr3 (4 HSPs)
chr3 (14-73)||(17005582-17005641)
chr3 (22-73)||(11665981-11666032)
chr3 (19-73)||(41961618-41961672)
chr3 (4-73)||(14832136-14832205)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-73)||(9716-9769)
[»] chr6 (8 HSPs)
chr6 (19-73)||(18367873-18367927)
chr6 (1-73)||(10294144-10294216)
chr6 (23-73)||(16488562-16488612)
chr6 (19-73)||(8365487-8365541)
chr6 (16-61)||(25038036-25038081)
chr6 (25-73)||(9195728-9195776)
chr6 (14-74)||(11352397-11352457)
chr6 (3-39)||(34595194-34595230)
[»] chr4 (7 HSPs)
chr4 (3-73)||(22234842-22234912)
chr4 (3-73)||(30982830-30982900)
chr4 (21-73)||(46083961-46084013)
chr4 (14-62)||(24613664-24613712)
chr4 (19-73)||(5414140-5414194)
chr4 (3-39)||(3947724-3947760)
chr4 (19-71)||(44132612-44132664)
[»] chr2 (5 HSPs)
chr2 (19-73)||(28524463-28524517)
chr2 (19-73)||(34784950-34785004)
chr2 (19-73)||(35056905-35056959)
chr2 (4-73)||(44860357-44860426)
chr2 (19-73)||(36096343-36096397)
[»] chr7 (8 HSPs)
chr7 (1-73)||(6630862-6630934)
chr7 (30-73)||(15902859-15902902)
chr7 (1-73)||(4008514-4008586)
chr7 (1-73)||(4013906-4013978)
chr7 (25-73)||(26329356-26329404)
chr7 (20-73)||(25822692-25822745)
chr7 (94-158)||(39732896-39732960)
chr7 (94-158)||(39839998-39840062)
[»] chr5 (7 HSPs)
chr5 (19-71)||(30183588-30183640)
chr5 (19-73)||(6401535-6401589)
chr5 (23-73)||(21814298-21814348)
chr5 (20-73)||(18592110-18592163)
chr5 (3-39)||(26312829-26312865)
chr5 (3-39)||(30098397-30098433)
chr5 (1-73)||(32766893-32766965)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-73)||(241631-241701)
[»] chr8 (5 HSPs)
chr8 (1-73)||(12570459-12570530)
chr8 (18-73)||(29447481-29447536)
chr8 (31-73)||(11927066-11927108)
chr8 (3-73)||(15816081-15816151)
chr8 (26-74)||(4122224-4122272)
[»] scaffold0623 (1 HSPs)
scaffold0623 (19-73)||(5964-6018)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17408800 - 17408574
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattacaaagaaggactaaacaaactaaccttaa 100  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17408800 cagattaggtgtatcttggtgtcggacacgtgtcgtgtctgataccaacacaacaccgacatatataattacaaagaaggactaaacaaactaaccttaa 17408701  T
Q  101 gccaagatggtacattgcttctatagccagtagcaagaacaacagaatcaatatcaagaacttttccatcaacaagttcaactttcccttgtgaaaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408700 gccaagatggtacattgcttctatagccagtagcaagaacaacagaatcaatatcaagaacttttccatcaacaagttcaactttcccttgtgaaaatct 17408601  T
Q  201 ctttattccaggaacaactttaatttc 227  Q
    ||||||||||| |||||||||||||||    
T  17408600 ctttattccagaaacaactttaatttc 17408574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 25934707 - 25934653
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||||| || ||| |||| | |||||||||||||||||||    
T  25934707 gtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattaca 25934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 34371798 - 34371750
Alignment:
Q  25 gacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||||| || || |||||||| |||||||||||||||||||||    
T  34371798 gacacgtgtcgtatccgacaccaacacgacaccgacacatataattaca 34371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 9828136 - 9828081
Alignment:
Q  18 ggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||| |||||||||||||||||| ||  |||| ||||||||||||| |||||||    
T  9828136 ggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattaca 9828081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 12919025 - 12918992
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacaca 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  12919025 gtgtcagacacgtgtcgtgtccgataccaacaca 12918992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 29856773 - 29856822
Alignment:
Q  94 accttaagccaagatggtacattgcttctatagccagtagcaagaacaac 143  Q
    |||||||||||||| || |||||||| | ||| |||||||||||||||||    
T  29856773 accttaagccaagaagggacattgctacgatatccagtagcaagaacaac 29856822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 41597449 - 41597497
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatata 67  Q
    ||||||||||||||||||||| || ||  |||||||||| |||||||||    
T  41597449 gtgtcagacacgtgtcgtgtccgacacggacacaacaccaacacatata 41597497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 17005582 - 17005641
Alignment:
Q  14 tcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||    
T  17005582 tcctggtgtcagacacgtgttatgtctgacaccaacacaacaccgacacttataattaca 17005641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 11666032 - 11665981
Alignment:
Q  22 tcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||| | | |||||| |||||||||||||||||||||    
T  11666032 tcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattaca 11665981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41961618 - 41961672
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||| ||||||||||||||| |||||| |||| |||||||||| | ||||||||    
T  41961618 gtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 41961672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 14832205 - 14832136
Alignment:
Q  4 attaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||| || ||| |||||| ||||||||||||||| |||||| |||| |||| ||||| | ||||||||    
T  14832205 attaggcgtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattaca 14832136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 9716 - 9769
Alignment:
Q  20 tgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  9716 tgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattaca 9769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 18367927 - 18367873
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||    
T  18367927 gtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattaca 18367873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10294216 - 10294144
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||| ||| |||| || || ||||| ||||||||| || |||||||| |||||||||||||||||||||    
T  10294216 cagattagctgtgtcctagtttcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattaca 10294144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 16488562 - 16488612
Alignment:
Q  23 cagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  16488562 cagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 16488612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 8365487 - 8365541
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||| ||||||||||||||| |||||| |||| |||||||||| | ||||||||    
T  8365487 gtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 8365541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 25038036 - 25038081
Alignment:
Q  16 ctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgaca 61  Q
    |||||||| ||||||||||||||| || |||||||||| |||||||    
T  25038036 ctggtgtcggacacgtgtcgtgtcggacaccaacacaataccgaca 25038081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 9195728 - 9195776
Alignment:
Q  25 gacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||| ||||||||| || ||| |||| |||||||||||||||||||||    
T  9195728 gacacatgtcgtgtcagacacctacacgacaccgacacatataattaca 9195776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 11352457 - 11352397
Alignment:
Q  14 tcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattacaa 74  Q
    ||||| |||| ||||||||| |||||||||||| |||| |||  || ||||||||||||||    
T  11352457 tcctgatgtcggacacgtgttgtgtctgataccgacacgacattgatacatataattacaa 11352397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34595230 - 34595194
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtc 39  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  34595230 gattaggtgtgtcccggtgtcagacacgtgtcgtgtc 34595194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 22234842 - 22234912
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||| ||| |||||||||| ||||||||||||||| || ||| |||| ||||||||||||| |||||||    
T  22234842 gattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattaca 22234912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 30982830 - 30982900
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||| || ||| |||||| |||||||||||||||||| ||| |||| |||||||||| ||||||||||    
T  30982830 gattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 46083961 - 46084013
Alignment:
Q  21 gtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||| |||||  |||| |||||||||||||||||||||    
T  46083961 gtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattaca 46084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 24613664 - 24613712
Alignment:
Q  14 tcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacac 62  Q
    ||||||||||||||||||||||||||||| ||| |||  ||||||||||    
T  24613664 tcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacac 24613712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 5414140 - 5414194
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||||| || ||  |||| ||||||| |||||||||||||    
T  5414140 gtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattaca 5414194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3947724 - 3947760
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtc 39  Q
    |||||||||| |||||||||| |||||||||||||||    
T  3947724 gattaggtgtgtcctggtgtcggacacgtgtcgtgtc 3947760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 44132612 - 44132664
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataatta 71  Q
    ||||||||||| ||| ||||  || |||||||| |||||||||||||||||||    
T  44132612 gtgtcagacacatgttgtgttcgacaccaacacgacaccgacacatataatta 44132664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 28524517 - 28524463
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||| ||||| || |||||||||||| |||||||||||||||||    
T  28524517 gtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattaca 28524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 34784950 - 34785004
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  34784950 gtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattaca 34785004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 35056959 - 35056905
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||| ||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  35056959 gtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 35056905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 44860426 - 44860357
Alignment:
Q  4 attaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||| ||| | |||| ||||| |||||||||  | |||||||| |||||||||||||||||||||    
T  44860426 attaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattaca 44860357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 36096343 - 36096397
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||||| || | | |||| ||||||||| |||||||||||    
T  36096343 gtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattaca 36096397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6630862 - 6630934
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||||| || ||||||| | ||||||| ||||| || |||||||| ||| |||||||||||||||||    
T  6630862 cagattaggtgtgtcttggtgtcgggcacgtgttgtgtccgacaccaacacgacatcgacacatataattaca 6630934  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 15902902 - 15902859
Alignment:
Q  30 gtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  15902902 gtgtcgtgtccgataccgacacaacaccgacacatataattaca 15902859  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4008514 - 4008586
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||| ||| |||||||| |||||| || | | | |||| ||||||||||| |||||||    
T  4008514 cagattaggtgtatcctggcgtcggacacgtgccgtgtcggacatcgatacaataccgacacatacaattaca 4008586  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4013906 - 4013978
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||| ||| |||||||| |||||| || | | | |||| ||||||||||| |||||||    
T  4013906 cagattaggtgtatcctggcgtcggacacgtgccgtgtcggacatcgatacaataccgacacatacaattaca 4013978  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 26329356 - 26329404
Alignment:
Q  25 gacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  26329356 gacacgtgtcgtgtctgacaccgacacgacgccgacacatataattaca 26329404  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 25822745 - 25822692
Alignment:
Q  20 tgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||||||||||||| |||||| | || |||||||||| | ||||||||    
T  25822745 tgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattaca 25822692  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 39732896 - 39732960
Alignment:
Q  94 accttaagccaagatggtacattgcttctatagccagtagcaagaacaacagaatcaatatcaag 158  Q
    |||| ||||||||| || |||||||| |  || ||||||||||||||||| | ||||||||||||    
T  39732896 acctgaagccaagaagggacattgctgcggtaaccagtagcaagaacaactgcatcaatatcaag 39732960  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 39840062 - 39839998
Alignment:
Q  94 accttaagccaagatggtacattgcttctatagccagtagcaagaacaacagaatcaatatcaag 158  Q
    |||| ||||||||| || |||||||| |  || ||||||||||||||||| | ||||||||||||    
T  39840062 acctgaagccaagaagggacattgctgcggtaaccagtagcaagaacaactgcatcaatatcaag 39839998  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 30183640 - 30183588
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataatta 71  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| | ||||||    
T  30183640 gtgtcggacacgtgtcgtgtctgataccaacacgacaccgacacttgtaatta 30183588  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 6401589 - 6401535
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||||| || ||  |||| |||||||||||||||||||||    
T  6401589 gtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattaca 6401535  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 21814348 - 21814298
Alignment:
Q  23 cagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  21814348 cagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 21814298  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18592163 - 18592110
Alignment:
Q  20 tgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||||||||| ||||| || ||| |||| |||||| ||||||||||||||    
T  18592163 tgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattaca 18592110  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26312865 - 26312829
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtc 39  Q
    |||||||||| |||||||||||||||||| |||||||    
T  26312865 gattaggtgtgtcctggtgtcagacacgtatcgtgtc 26312829  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 30098433 - 30098397
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtc 39  Q
    |||||||||| |||||||||| |||||||||||||||    
T  30098433 gattaggtgtgtcctggtgtctgacacgtgtcgtgtc 30098397  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32766893 - 32766965
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||  ||||||||||||| |||||||||||| |  || ||| |||| ||||  |||||||||||||||    
T  32766893 cagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattaca 32766965  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 241701 - 241631
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||| || ||| |||||| ||||||||||||||| || |||||||| ||||||||||  |||||||||    
T  241701 gattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattaca 241631  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 12570459 - 12570530
Alignment:
Q  1 cagattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||| || |||||||||| ||||||||| |||||||| ||| | ||| || |||||||||||||||||    
T  12570459 cagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgataca-catcgacacatataattaca 12570530  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 29447536 - 29447481
Alignment:
Q  18 ggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||| ||||| |||||||||||| ||| |||| ||||| |||||||||||||||    
T  29447536 ggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattaca 29447481  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 11927066 - 11927108
Alignment:
Q  31 tgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    |||||||| ||| |||||||| |||||||||||||||||||||    
T  11927066 tgtcgtgtatgacaccaacacgacaccgacacatataattaca 11927108  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 15816081 - 15816151
Alignment:
Q  3 gattaggtgtatcctggtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||| || ||| |||||| ||  ||||||||||| || |||||||| |||||||||| ||||||||||    
T  15816081 gattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattaca 15816151  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 4122224 - 4122272
Alignment:
Q  26 acacgtgtcgtgtctgataccaacacaacaccgacacatataattacaa 74  Q
    ||||||||||||| ||| |   |||||||||||||||||||||||||||    
T  4122224 acacgtgtcgtgtttgacattgacacaacaccgacacatataattacaa 4122272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 5964 - 6018
Alignment:
Q  19 gtgtcagacacgtgtcgtgtctgataccaacacaacaccgacacatataattaca 73  Q
    ||||||||||||||||||||  || ||| | || |||||||||||||||||||||    
T  5964 gtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattaca 6018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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