View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_10 (Length: 556)
Name: NF15554_high_10
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6022056 - 6021821
Alignment:
| Q |
1 |
tagagaaaacataaaacgtgtcatatttggaaaatttaatgaaatgaagc-------aatatttgtctttgttttctaaatgacacccaattatatatag |
93 |
Q |
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| T |
6022056 |
tagagaaaacataaaacgtgtcatatttggaaagtttaatgaaatgaaaccaatataaatctttgtctatgctttctaaatgtgacccaattatatatag |
6021957 |
T |
|
| Q |
94 |
aaagaatgtgtaacatatttgacattttcatcattgcgcgtttgtgtgatatg---nnnnnnnnttacatctttgaattttccttggattaagaggagga |
190 |
Q |
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| T |
6021956 |
aaagaatgtgtaacatatttgacattttcatcattgcgcgtttgtgtgatatgaaaaaaaaaaattacatctttgaattttccttggattaagaggagga |
6021857 |
T |
|
| Q |
191 |
tgcaaaattcgttattatcacatgctaaaatgtaaa |
226 |
Q |
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| T |
6021856 |
tgcaaaattcgttattatcacatgctataatgtaaa |
6021821 |
T |
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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 440 - 540
Target Start/End: Original strand, 17104789 - 17104889
Alignment:
| Q |
440 |
taatccactattcacctggaactctattgacttctaataaaggcgaatgacacaatagttgtgtaaaaagtaatttttatccattttcagtattatatat |
539 |
Q |
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| T |
17104789 |
taattcactattcaactgcaactctattgacttctaataaaggcgaatgacacaatagttgtgtaaaaagtaacttttatccattctctttattatatat |
17104888 |
T |
|
| Q |
540 |
t |
540 |
Q |
| |
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| |
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|
| T |
17104889 |
t |
17104889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 224 - 342
Target Start/End: Original strand, 17104580 - 17104699
Alignment:
| Q |
224 |
aaatgagtcatttaattcatttattagaattgagttatttcttttcannnnnnn-aaataacataattccattaaatcaagttaaattaaaatttgataa |
322 |
Q |
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| T |
17104580 |
aaatgagtcatttaatttatttgttaaaattgagttatttcttctcattttttttaaataacataattccattgactcaagttaaatgaaaatttgataa |
17104679 |
T |
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| Q |
323 |
tatctaattataattcacaa |
342 |
Q |
| |
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| T |
17104680 |
tatctaattacaattcacaa |
17104699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 35077957 - 35078019
Alignment:
| Q |
278 |
aaataacataattccattaaatcaagttaaatta-aaatttgataatatctaattataattca |
339 |
Q |
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|||||| |||||| |||| | |||||||| | || |||||||||||||||||||||||||||| |
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| T |
35077957 |
aaataaaataatttcattgattcaagttagaatataaatttgataatatctaattataattca |
35078019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 23725279 - 23725308
Alignment:
| Q |
310 |
taaaatttgataatatctaattataattca |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
23725279 |
taaaatttgataatatctaattataattca |
23725308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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