View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_12 (Length: 544)
Name: NF15554_high_12
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 28887420 - 28887946
Alignment:
| Q |
1 |
ccaaaaggaaaatgatcacctaggccaaatatgaccttggaataatgagtacatgacagtaatataatcatagttaattaattttcttactctaatttcc |
100 |
Q |
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| T |
28887420 |
ccaaaaggaaaatgatcacctaggccaaatatgaccttggaataatgagtacatgacagtaatataatcatagttaattaattttcttactctaatttcc |
28887519 |
T |
|
| Q |
101 |
ataagctattcttagttgttattttctttataacatttcaatctttccgttaccaatattcatgcaaacggcaattgattccagatatatatactccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887520 |
ataagctattcttagttgttattttctttataacatttcaatctttccgttaccaatattcatgcaaacggcaattgattccagatatatatactccttt |
28887619 |
T |
|
| Q |
201 |
aaaaaa-cattaacatatgtcattgtaaccaacttaacataattattttttaaaagaaggttcatcattttgatgatactatataaggaacaagcttgta |
299 |
Q |
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| T |
28887620 |
aaaaaaacattaacatatgtcattgtaaccaact-aacataattattttttaaaagaaggttcatcattttgatgatactatataaggaacaagcttgta |
28887718 |
T |
|
| Q |
300 |
agaaataggtgctaatacaacaaatttagattcatcaatcacctcctaagtgttacgtaatgggaacagaagccataaggtactttttgttttgtttagg |
399 |
Q |
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| T |
28887719 |
agaaataggtgctaatacaacaaatttagattcatcaatcacctcctaagtgttacataatggggacagaagccataaggtactttttgttttgtttagg |
28887818 |
T |
|
| Q |
400 |
tggtctttgtatacaaaaaatagcaaatactttgtaacaacatagttgatttttagttttatgaaatttgttttcaggtatgctgttgtgacaggagcaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887819 |
tggtctttgtatacaaaaaatagcaaatactttgtaacaacatagttgatttttagttttatgaaatttgttttcaggtatgctgttgtgacaggagcaa |
28887918 |
T |
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| Q |
500 |
ataagggaattggttatggaatatgtaa |
527 |
Q |
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| T |
28887919 |
ataagggaattggttatggaatatgtaa |
28887946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 11925873 - 11925922
Alignment:
| Q |
475 |
aggtatgctgttgtgacaggagcaaataagggaattggttatggaatatg |
524 |
Q |
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|||||||| |||| |||||||| |||||||||||||||||||||||||| |
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| T |
11925873 |
aggtatgcacttgtaacaggagctaataagggaattggttatggaatatg |
11925922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 11945836 - 11945787
Alignment:
| Q |
475 |
aggtatgctgttgtgacaggagcaaataagggaattggttatggaatatg |
524 |
Q |
| |
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|||||||| |||| |||||||| |||||||||||||||||||| ||||| |
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| T |
11945836 |
aggtatgcacttgtaacaggagctaataagggaattggttatgggatatg |
11945787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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