View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_high_13 (Length: 512)

Name: NF15554_high_13
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_high_13
NF15554_high_13
[»] chr4 (20 HSPs)
chr4 (15-512)||(27486402-27486899)
chr4 (203-473)||(27505945-27506217)
chr4 (203-512)||(27479506-27479817)
chr4 (15-178)||(27479342-27479504)
chr4 (24-178)||(27506219-27506373)
chr4 (389-512)||(27469257-27469376)
chr4 (341-480)||(27498155-27498300)
chr4 (341-512)||(27476431-27476606)
chr4 (341-512)||(27526333-27526508)
chr4 (72-117)||(27468898-27468943)
chr4 (77-134)||(27503442-27503499)
chr4 (75-134)||(27556962-27557021)
chr4 (386-433)||(27557285-27557332)
chr4 (41-134)||(27489628-27489721)
chr4 (17-106)||(27500938-27501026)
chr4 (73-134)||(27524041-27524102)
chr4 (344-382)||(27514128-27514166)
chr4 (72-134)||(27514410-27514472)
chr4 (337-382)||(27445149-27445194)
chr4 (77-117)||(27476133-27476173)
[»] chr5 (1 HSPs)
chr5 (387-464)||(1754502-1754579)


Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Original strand, 27486402 - 27486899
Alignment:
Q  15 acattgtaccaccaccctttcaagttcaacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcat 114  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27486402 acattataccaccaccctttcaaattcaacctcatattttttcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcat 27486501  T
Q  115 tattaaagtgttgatgtccatcttgtatcgacctaacgaacggatagactaatctgaattatttcaagtggattaacatgctttgttcaaggtggtgcat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27486502 tattaaagtgttgatgtccatcttgtatcgacctaacgaacggatagactaatctgaattatttcaagtggattaacatgctttgttcaaggtggtgcat 27486601  T
Q  215 tatctaccatgaaattaatttgattttgacccatgttgaagtcctccaaaacaataacatgtgatctttcatatggacttgtctcccaaagttttcatgc 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27486602 tatctaccatgaaattaatttgattttgacccatgtggaagtcctccaaaacaataacatgtgatctttcatatggacttgtctcccaaagttttcatgc 27486701  T
Q  315 ctcatccatctcatggctctccttcaagttgccgactgtttgttacatatcctttcatttgtatatatatacaagcatttaggaccaacacgaaatcact 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27486702 ctcatccatctcatggctctccttcaagttgccgactgtttgttacatatcctttcatttgtctatatatacaagcatttaggaccaacacgaaatcact 27486801  T
Q  415 cacaaccaaaagcatttgaaattcagaaagttgagccttctatttacaaacaagtctttcatttttagatcaagcttctcttttcaacacatacatac 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27486802 cacaaccaaaagcatttgaaattcagaaagttgagccttctatttacaaacaagtctttcatttttagatcaagcttctcttttcaacacatacatac 27486899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 203 - 473
Target Start/End: Complemental strand, 27506217 - 27505945
Alignment:
Q  203 aaggtggtgcattatctaccatgaaattaatttgattttgacccatgttgaagtcctccaaaacaataacatgtgatctttcatatggacttgtctccca 302  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  27506217 aagggggtgcattatctaccatgaaattagtttgatgttgacccatgtgtaagtcctccaaaacaaaaccatgtgatctttcatatggacttgtctccca 27506118  T
Q  303 aagttttcatgcctc--atccatctcatggctctccttcaagttgccgactgtttgttacatatcctttcatttgtatatatatacaagcatttaggacc 400  Q
     |||||||||| |||  ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  27506117 tagttttcatgactctaatccatctcgtggctctcctgcaagttgccgactgtttgttacatatcctttcattcgtctatatatacaagcattttggacc 27506018  T
Q  401 aacacgaaatcactcacaaccaaaagcatttgaaattcagaaagttgagccttctatttacaaacaagtcttt 473  Q
    |||||  || || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  27506017 aacacacaaccattcacaaccaaaagcatttgaaattcagaaacttgagcattctatttacaaacaagtcttt 27505945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 203 - 512
Target Start/End: Original strand, 27479506 - 27479817
Alignment:
Q  203 aaggtggtgcattatctaccatgaaattaatttgattttgacccatgttgaagtcctccaaaacaataacatgtgatctttcatatggacttgtctccca 302  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  27479506 aagggggtgcattatctaccatgaaattaatttgatgttgacccatgtgtaagtcctccaaaacaataccatgtgatcattcatatggacttgtctccca 27479605  T
Q  303 aagttttcatgcct--catccatctcatggctctccttcaagttgccgactgtttgttacatatcctttcatttgtatatatatacaagcatttaggacc 400  Q
     |||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||| | |||||||||||    
T  27479606 tagttctcatgacttgcatccatctcatggctctccttcaagttgccgactatttgttacatatcctttca-tcgtctatatatacgatcatttaggacc 27479704  T
Q  401 aacacgaaatcactcacaaccaaaagcatttgaaattcagaaagttgagccttctatttacaaacaagtctttcatttttagatcaagcttc---tcttt 497  Q
    || || ||| || |||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||| ||  || ||||||||  |||||||   |||||    
T  27479705 aatacaaaaccattcacaaccaaaaccatttgaaagtcagaaacttgagccttctgtttacaaacaattc--tcctttttagaataagcttctgatcttt 27479802  T
Q  498 tcaacacatacatac 512  Q
    |||||||||||||||    
T  27479803 tcaacacatacatac 27479817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 27479342 - 27479504
Alignment:
Q  15 acattgtaccaccaccctttcaagttcaacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27479342 acattgtaccaccaccctttcaagttcaacctcatattttatcatctattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcat 27479441  T
Q  115 tattaaagtgttgatgtccatcttgtatcgacctaacgaacggatagactaatctgaattattt 178  Q
    ||| |  ||| ||||||||| || ||||||| ||||||||  |||||||||||||| |||||||    
T  27479442 tatcatggtgctgatgtccagctagtatcga-ctaacgaatagatagactaatctgcattattt 27479504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 27506373 - 27506219
Alignment:
Q  24 caccaccctttcaagttcaacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagt 123  Q
    |||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  27506373 caccaccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagt 27506274  T
Q  124 gttgatgtccatcttgtatcgacctaacgaacggatagactaatctgaattattt 178  Q
    | ||||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  27506273 gctgatgtccagctagtatcgacctaacgaacggatagactaatctgcattattt 27506219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 512
Target Start/End: Original strand, 27469257 - 27469376
Alignment:
Q  389 gcatttaggaccaacacgaaatcactcacaaccaaaagcatttgaaattcagaaagttgagccttctatttacaaacaagtctttcatttttagatcaag 488  Q
    ||||||||||||||||  ||| || ||||| || || |||||||||||||||||| ||||| ||||||| |||||     |||||| |||||||| ||||    
T  27469257 gcatttaggaccaacaaaaaaccattcacatcccaaggcatttgaaattcagaaacttgagtcttctatatacaac----tctttcttttttagaccaag 27469352  T
Q  489 cttctcttttcaacacatacatac 512  Q
    |||||||||| |||||||||||||    
T  27469353 cttctcttttaaacacatacatac 27469376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 480
Target Start/End: Original strand, 27498155 - 27498300
Alignment:
Q  341 agttgccgactgtttgttacatatcctttcatttgtatatat------atacaagcatttaggaccaacacgaaatcactcacaaccaaaagcatttgaa 434  Q
    |||||||||||||||||||||||||||||||| | |||||||       | |||||| ||||||| ||||| |||||| |||||| | ||| ||||||||    
T  27498155 agttgccgactgtttgttacatatcctttcatctatatatattcatgccttcaagcagttaggacaaacacaaaatcattcacaatccaaaacatttgaa 27498254  T
Q  435 attcagaaagttgagccttctatttacaaacaagtctttcattttt 480  Q
    ||||||||| | |||  |||||| | |||| |||| |||| |||||    
T  27498255 attcagaaactcgagttttctatattcaaataagtttttctttttt 27498300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 341 - 512
Target Start/End: Original strand, 27476431 - 27476606
Alignment:
Q  341 agttgccgactgtttgttacatatcctttcatttgtatatat-at-------acaagcatttaggaccaacacgaaatcactcacaaccaaaagcatttg 432  Q
    ||||||||||||||||||| |||||||||||| | ||||||| ||       | |||||||||| |||||||  |||| | ||||| || || |||||||    
T  27476431 agttgccgactgtttgttaaatatcctttcatctatatatattattgactgcaaaagcatttagcaccaacaaaaaataattcacatcccaaggcatttg 27476530  T
Q  433 aaattcagaaagttgagccttctatttacaaacaagtctttcatttttagatcaagcttctcttttcaacacatacatac 512  Q
    ||||||||||| ||||| |||||||    | |||| | |||| ||||||||||||  |  ||||||||||||||||||||    
T  27476531 aaattcagaaacttgagtcttctat----atacaactgtttcttttttagatcaatatcttcttttcaacacatacatac 27476606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 341 - 512
Target Start/End: Complemental strand, 27526508 - 27526333
Alignment:
Q  341 agttgccgactgtttgttacatatcctttcatttgtatatat--at------acaagcatttaggaccaacacgaaatcactcacaaccaaaagcatttg 432  Q
    |||||||||||||||||||||||||||||||| | |||||||  ||      | |||||||||| |||||||  |||||| ||||| || || |||| ||    
T  27526508 agttgccgactgtttgttacatatcctttcatctatatatattcatggctgcaaaagcatttagcaccaacaaaaaatcattcacatcccaaggcatctg 27526409  T
Q  433 aaattcagaaagttgagccttctatttacaaacaagtctttcatttttagatcaagcttctcttttcaacacatacatac 512  Q
    || |||||||| ||||| ||||    || | ||||||||||| |||||||| ||| ||   |||||||||||||||||||    
T  27526408 aagttcagaaacttgagtcttc----taaatacaagtctttcttttttagaccaatctctccttttcaacacatacatac 27526333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 27468898 - 27468943
Alignment:
Q  72 acttcataattgtgtaaacatgtttcagacatgttttcttcattat 117  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  27468898 acttcataattttgtaaacatgcttcagacatgttttcttcattat 27468943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 27503499 - 27503442
Alignment:
Q  77 ataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca 134  Q
    |||||| |||||||||| ||||||||||||||||||||||| | | ||||||||||||    
T  27503499 ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca 27503442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
Q  75 tcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca 134  Q
    |||||||| |||||||||| || |||||||||||||||||||| | ||||||||| ||||    
T  27556962 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca 27557021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 27557285 - 27557332
Alignment:
Q  386 caagcatttaggaccaacacgaaatcactcacaaccaaaagcatttga 433  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  27557285 caagcatttaggaccaacacaaaatcattcacaacctaaagcatttga 27557332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 27489721 - 27489628
Alignment:
Q  41 caacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca 134  Q
    |||||||||||||  |||| |||||| |   ||||  ||||| |||||||||| || |||||||||||||||||||| ||| ||| ||||||||    
T  27489721 caacctcatatttattcatgcattaattggtactttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca 27489628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 27501026 - 27500938
Alignment:
Q  17 attgtaccaccaccctttcaagttcaacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgtt 106  Q
    |||||||| |||||||||||| | ||||| | |||||  |||| ||||||  |  ||||||||||||||||| |||||||||||||||||    
T  27501026 attgtacc-ccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgtt 27500938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 27524102 - 27524041
Alignment:
Q  73 cttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca 134  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||| | | || |||||||||    
T  27524102 cttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca 27524041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 27514166 - 27514128
Alignment:
Q  344 tgccgactgtttgttacatatcctttcatttgtatatat 382  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  27514166 tgccgactgtttgttacatatcctttcatctatatatat 27514128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 27514472 - 27514410
Alignment:
Q  72 acttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca 134  Q
    ||||||||||| |||||||||| || ||||||||||||| |||||| | | || |||||||||    
T  27514472 acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca 27514410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 27445194 - 27445149
Alignment:
Q  337 ttcaagttgccgactgtttgttacatatcctttcatttgtatatat 382  Q
    |||||||||| |||||||| |||||||||||||||| | |||||||    
T  27445194 ttcaagttgctgactgtttattacatatcctttcatctatatatat 27445149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 27476133 - 27476173
Alignment:
Q  77 ataattgtgtaaacatgtttcagacatgttttcttcattat 117  Q
    |||||| ||||| |||| |||||||||||||||||||||||    
T  27476133 ataattttgtaagcatgcttcagacatgttttcttcattat 27476173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 1754579 - 1754502
Alignment:
Q  387 aagcatttaggaccaacacgaaatcactcacaaccaaaagcatttgaaattcagaaagttgagccttctatttacaaa 464  Q
    ||||||||||||||||||| |||||| |||||  | || |||||||||||||||||| ||||| ||||||| ||||||    
T  1754579 aagcatttaggaccaacacaaaatcattcacattccaaggcatttgaaattcagaaacttgagtcttctatatacaaa 1754502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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