View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15554_high_14 (Length: 466)
Name: NF15554_high_14
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 225 - 448
Target Start/End: Complemental strand, 48415604 - 48415374
Alignment:
| Q |
225 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctg-------tacaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
|
| Q |
318 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtnnnnnnntatctatcttgacattgtatatgaattaaatccg |
417 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatatgaattaaatccg |
48415405 |
T |
|
| Q |
418 |
ttcacattacggatgtttgtgttggcatttt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48415404 |
ctcacattacggatgtttgtgttggcatttt |
48415374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 48415824 - 48415684
Alignment:
| Q |
11 |
cgaagaatatcaacatttttatcaatcacatgaggcacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48415824 |
cgaagaatatcaacatttttatcaatcacatgaggtacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgta |
48415725 |
T |
|
| Q |
111 |
aatcgttacatcgaatgcgaaggatccaatgccagagtatc |
151 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48415724 |
aatcgttacattgaatgcgaaggatccaatgccagagtatc |
48415684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University