View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_18 (Length: 440)
Name: NF15554_high_18
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 27166736 - 27166491
Alignment:
| Q |
17 |
aaaatgtaactaattcatactaagaatcaagagagataacagtggatccaaatgtcctttattttaattattatgatcgaaatacatagtagatagatcc |
116 |
Q |
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| T |
27166736 |
aaaatgtaactaattcatactaaaaatcatgagagataacagtggatccaaatgtcctttattttaattattatgatcaaaatacatagtagatagatcc |
27166637 |
T |
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| Q |
117 |
ccagttgggatttggttacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatatttattcattcatcaagtgcaa |
216 |
Q |
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| T |
27166636 |
ccagttgggatttggttacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatatttattcattcatcaagtgcaa |
27166537 |
T |
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| Q |
217 |
gccctgctagtttatcctgcaatgagcaaagtgaatatgacattag |
262 |
Q |
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| T |
27166536 |
gccctgctagtttatcctgcaatgagcaaagtgaatatgacattag |
27166491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 271 - 432
Target Start/End: Complemental strand, 27166457 - 27166296
Alignment:
| Q |
271 |
ttacaactaataaaatgttggatattatttttagtccccaaagtatttggtttatgttgaattagttcttatcgaattgtaaactcatatttaagaaatt |
370 |
Q |
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| T |
27166457 |
ttacaactaataaaatgtttgatattagttttagtccccaaagtatttggtttatgttgaattagttcttatcaatttgtaaactcatatttaagaaatt |
27166358 |
T |
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| Q |
371 |
aaaagcaaaagtttatattttgaatgaattttcaatttactttctcaaatatcatattcttc |
432 |
Q |
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| T |
27166357 |
aaaaggaaaagtttatattttgaatgaattttcaatttactttctcaaatatcatattcttc |
27166296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 33 - 262
Target Start/End: Complemental strand, 27221361 - 27221139
Alignment:
| Q |
33 |
atactaagaatcaagagagataacagtggatccaaatgtcctttattttaattat--tatgatcgaaatacatagtagatagatccccagttgggatttg |
130 |
Q |
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|||||||||||||||||| |||||||| || ||||||| ||||||||||||| | ||| ||||||||||||||||||||||| ||||||| |
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| T |
27221361 |
atactaagaatcaagagatataacagtaaattcaaatgttctttattttaattttaatattatcgaaatacatagtagatagat---------ggatttg |
27221271 |
T |
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| Q |
131 |
gttacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatatttattcattcatcaagtgcaagccctgctagttta |
230 |
Q |
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| T |
27221270 |
gttacagtcggagaaattaaatcatctcctttattctgttttggttatcaccacaaactaaatacttattcattcatcaagtgcaagccctgctagttta |
27221171 |
T |
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| Q |
231 |
tcctgcaatgagcaaagtgaatatgacattag |
262 |
Q |
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| T |
27221170 |
tcctgcaatgagcaaagtgaatatgacattag |
27221139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 27135498 - 27135371
Alignment:
| Q |
96 |
aaatacatagtagatagatccccagttgggatttggttacagtcggagaaattaattcaattcctttattctcttttggttatcaccacaaaccaaatat |
195 |
Q |
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|||||||| ||| | ||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| || |||||| |||||| ||||| || |
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| T |
27135498 |
aaatacatggtaaagagatccctagttgggatttggttacaatcggagaaattaagtcatctcctttattctgttgcggttattaccacataccaagtac |
27135399 |
T |
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| Q |
196 |
ttattcattcatcaagtgcaagccctgc |
223 |
Q |
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|||||||||||| ||| |||||||||| |
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| T |
27135398 |
ttattcattcattaagcacaagccctgc |
27135371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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