View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_21 (Length: 405)
Name: NF15554_high_21
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 3 - 386
Target Start/End: Complemental strand, 24001863 - 24001480
Alignment:
| Q |
3 |
aatatgcaatacatagaagattgagtatatcattgcaaactagagaatatgagctgcatcacaaacaaccctacctaggatttggaccacatatatctga |
102 |
Q |
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| T |
24001863 |
aatatgcaatacatagaagattgagtatatcattgcaaactagagaatatgagctgcatcacaaacaaccctacctaggatttggaccacatatatctga |
24001764 |
T |
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| Q |
103 |
ttcattgatttcaatctgcatagagcccttgactgataaacttctcctttggcttgcactcctttcaataggcattactagagacaaacaatcctttagc |
202 |
Q |
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| T |
24001763 |
ttcattgatttcaatctgcatagagcccttgactgataaacttctcctttggcttgcactcctttcaataggcattactagagacaaacaatcctttagc |
24001664 |
T |
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| Q |
203 |
tctgagacaatctcttttatgtcaggcctctgtgttgcaaactgggaaaggcaagacatggctgtctcaatgagtttccaagccgaatctctattgtatt |
302 |
Q |
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| T |
24001663 |
tctgagacaatctcttttatgtcaggcctctgtgttgcaaactgggaaaggcaagacatggctgtctcaatgagtttccaagccgaatctctattgtatt |
24001564 |
T |
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| Q |
303 |
caccttgtaaccttggatcaactattccttgaacatctcctatttcaagttttcgattaacccatggtagtatgtgaatataat |
386 |
Q |
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| T |
24001563 |
caccttgtaaccttggatcaactattccttgaacatctcctatttcaagttttcgattaacccatggtagtatgtgaatataat |
24001480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 66 - 254
Target Start/End: Original strand, 23962369 - 23962557
Alignment:
| Q |
66 |
aacaaccctacctaggatttggaccacatatatctgattcattgatttcaatctgcatagagcccttgactgataaacttctcctttggcttgcactcct |
165 |
Q |
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| T |
23962369 |
aacaaccctacctaggaatcggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgataaacttctcctttggcttgcactctt |
23962468 |
T |
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| Q |
166 |
ttcaataggcattactagagacaaacaatcctttagctctgagacaatctcttttatgtcaggcctctgtgttgcaaactgggaaaggc |
254 |
Q |
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| T |
23962469 |
ttcaaacggcattattagagacaaacagtcctttagctctgagacaatctcttttatgtcaggtctttgtgttgcaaactggcaaaggc |
23962557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 23963206 - 23963330
Alignment:
| Q |
262 |
ggctgtctcaatgagtttccaagccgaatctctattgtattcaccttgtaaccttggatcaactattccttgaacatctcctatttcaagttttcgatta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
23963206 |
ggctgtctcaatgagtttccaagccgaatctctattatattcaccctgtaaccttggatcaactattccttgaaaatctcctatttcgagttttcgatta |
23963305 |
T |
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| Q |
362 |
acccatggtagtatgtgaatataat |
386 |
Q |
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|||||||||||||| |||||||||| |
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| T |
23963306 |
acccatggtagtatatgaatataat |
23963330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 23962226 - 23962276
Alignment:
| Q |
3 |
aatatgcaatacatagaagattgagtatatcattgcaaactagagaatatg |
53 |
Q |
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||||| || |||||||| |||||||||||||||||||||| |||||||||| |
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| T |
23962226 |
aatatacagtacatagaggattgagtatatcattgcaaaccagagaatatg |
23962276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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